K06513

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06513

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06513

Determination of introduced cDNA(s)

  • J033147L19 - Rice Full-length cDNAs - Original: J033147L19

    full reading [+] show sequence

    Nucleotide sequence: J033147L19 - full reading 
    GGTCACTTTC CCCATCCCTC CCGCGAAAAG CAGACAGACG CCCACAACCC 
    ACCACCACGT CTAGGGTTCC GCCGCTCCTC CGGCCGCCGC CGCCGCCGCC 
    GCCGACCCCC CTCGATCTCC TCCCCGAGCC GCCATAGGTG GTGGCGGGGG 
    CGGGGGAGCT AGCATCCGTC CGTCAACGCA CATCGTCACT GCTGCTTCCT 
    GAAATCTGCC ACCATGTCCG ACATGGAGTC CATGGCTACA CTTATGGAGT 
    CCACAGGCTC CAAGCTGCAG CAGCTTCAGC GTGCATTTGC AGAGCTCGAG 
    AGCCAGAGCG CTGTTTCCTT GAACTTAAAG TGGAAGCAAC TGGAGGACCA 
    TTTCCATGGG CTTGAGCAGT CGCTCAAGAA AAAGTTTGAT GATCTGAAAA 
    GGCAGGAAGA GGAGTTCGAG GAGACGGTTG CAAAGTCAGA GCAGATGCTG 
    GAGCAACAAG AGGCTGTTGT CGTGGCAAAG GAACTGACTT CTCTTGAAAA 
    ACTGCAGCAG AAAAGGGATG CCGCGTTGGC TGTGATCTTT GGCAAGTCCA 
    AGCTGAACTT GTCTACGCCT CTTATCAACC CAATCAGCAA ATCCGTGAAT 
    AACAATGCTG TGTTTAATGG AAACATCGGT GGTAGTCTTT CTGTTAAGTG 
    GCCCAAACCT GCAACTGCGC ATGGTGCATA CCTGCAAGAT GAAAACACTG 
    CTGTGAAGCC TCGTTCTCAA CTTGTTGTCC TCTGTGAAGA GATGAATGTT 
    AACGGGCTTC ATAAGTTCAT ATCAGACAAT CGCAAAGACT TAACATCCAT 
    CCGTGAGGAA ATCCCCGTTG CACTTAGGGG AGCAACTGAT CCATATGGCT 
    TGGTGTTAGC TTCTCTAGAA GACTTCTATT TTGGAGACAA TCTTATATTG 
    GATGGCAAAA AGGATGGAAA CCTTCTGGGT GTACGGAGGA CGTGCCTCAT 
    GTTGATGGAA TCACTTGCTC AGCTGCAAAC TGATGCTACT ACTGGTTTCA 
    TATCGGAAGG TCAAGTGCTT ACTGCAAGTA TCAAGGAGCG TGCAAAAAAG 
    ATTGCTCTTG AGTGGAAATC CAAGTTGGAT AGCCTTGACT TTGATGCTAG 
    CAATGGGAAC TGCCTGGAAG CACATGCGTT TCTTCAACTC CTGGCTACCT 
    TTGGTATATT TGCTGAATTT GCACAAGATG AGCTGTGTAA GCTACTTCCC 
    TCAGTCAGTC GTCGTCGTCA GACACCTGAG CTTTGTAGAA TACTTGGATT 
    GTCCCAGAAC ATGCCAGGTG TCATTGGAGT TCTGGTTGAA AATGGGAGAA 
    CTATTGATGC AATTAATTTG GCTTATGCAT TTGAGCTGAC TAATCAGTTT 
    GAACCGGTGG AATTACTGAA AGCCTATCTA CAGGAGGTCA AGAGTGTGCC 
    ACATTTCAAG ACTGGAAAGA TATCTCTGCA AGTACAGAAT GAAATGAATG 
    AACGAGAGCT GTCTGCCTTG AAAGCTGCTA TTAAGTGTAT CGAGGAGCAC 
    AAACTTGATG AGAAATATCC GATTGACCTG CTTCAGAAAA GAGTTATCCA 
    GCTAGAGAAA GCTAAGGCAG ACAAGAGGAG GGCTGTTGAA GCTGCAAAGC 
    CACAGTCTAA GAGGCCTCGT GCCAATGGAT CCGTATATGC GCCACATACT 
    AGCTTTCCTG ACAAAAGCTT CTACCAGGCT GCTCCGCCGC AGAGGCATTC 
    CTACCCTTAC GAGAGGCAGT ATGTGTATGG TGCTGAGGCC CATCACCATC 
    CCACAATGAT AAGCTCAGCT CCCTATGGCA TCTCACCTGC CCACACAACA 
    TATTATGGTA ATGGCTATCA GGTTCAGTAC CAGGTACCAT ATATCCACTG 
    ATGGAGAGAG CGTAATGTGC TCTTTCCTAA CTATGTACTA GCTTTTAACC 
    TGCTGCTACT ATGTGCTGTA GTTGTATCAA TCCACTAGCT AGACTGCCTA 
    GCTTAAATTA GTTCGACCAC TCTTGTGTGT GCTGAGTGGC CAGTGTGAAA 
    ATCTGTTAAT TTCCCTCACG ACTTATGACA TAATTTACTT CTAATGTCTA 
    GTTAAAATAA TTTGCTTTTG TTTAATATAT AGCCTATGGC ATATATATGT 
    TGGAGTTGAG ATAGTCCCAG TACTGCAGAA TTCTGGAATT ATGTGCTCTG 
    CTTGGTGGAA TTATCCACTA ATTCCTTTC

    Gene models with high sequence identity

    1. AT5G48385.1 [+] show detail - FRIGIDA-like protein
      E-value: 1e-132; Score: 471.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Frigida-like 4.9e-95

    See the detailed result >

    AT5G48385.1

    Model type
    Protein coding
    Short Description
    FRIGIDA-like protein
    Computational Description
    FRIGIDA-like protein; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT4G14900.1); Has 1269 Blast hits to 1187 proteins in 101 species: Archae - 0; Bacteria - 22; Metazoa - 72; Fungi - 9; Plants - 1133; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR