K06532

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06532

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06532

Determination of introduced cDNA(s)

  • J023020G14 - Rice Full-length cDNAs - Original: J023020G14

    full reading [+] show sequence

    Nucleotide sequence: J023020G14 - full reading 
    GACTGCCCCG CGGCCGGGCT TGCAGATCGG CGCCGCCGGG AATGGCTTCC 
    GGGCATGCTC CCTGCGGCGT CTCAGGTATC GTGTCTGCGG CGGGGATAGG 
    GTCAGGGCAC CTCCAGTAGA CACTCACGCA CATGATCTCC ATGCCTCTGA 
    CTGCTTACAC GAACTCCGGC CAGGCGATAA CATTGAGATC CAATGGAGAA 
    GGAACAAGGA ATTCCCCTAT GGCTGGTGGT ATGGAGTTGT TGGCCACTTG 
    GAGTCATGTG ATGGAAGTGA GCACTTTTGT CGGTGTCATC TTAGTGACAC 
    TGTTGTTCTG GAGTTCAACC AATACACACC TGGTTCAAGA TGGAGGCAGG 
    CGCTGGTGAA CCGGAAGGAC CACAGGGAAG AGGGCAATGA GGGCGACGGT 
    TTCTACGGTG GAATCAGGAA GCTCCGCAGC AAGGATGAGA TCTCAAAGTG 
    GAGACAGTTG TGGCCAACAG ACATTCTTGA GTAGCAAGGG CAGAGATTAT 
    TATTCCACTG TTGTTATTCA TCAAGTTGCC AAATTGATGC TCTCCAATTG 
    CTCATTCTGT ATTCTGAAAC CTGACGAAAA CGCCACCCAT CTCCTCCACT 
    CAAGTTGTAT ACACAAAGGA TTGGAACATG GGGTGACAAA ATTTGGTAGC 
    TTGGGACACA ATTGTGAAAC TTACTGTAAG GCACGGATGC ACAGATTGCT 
    TCTGTAAACG GGCGTTAACT GAACATGTAT CAAGTCTACA GCATTGTATG 
    TGACTGCTGC AGCCTGTGCC TCTGCATGTT GTTGTAGCTG TAGAGCAGAA 
    AGATCAAATG TAAATTACAT TGTTAGCTCC AATTTAATTT ACGGCATTTC 
    AGGATGCCGT CTCACGGTTA CCCTATCCAT GCGCTTTTTC

    Gene models with high sequence identity

    1. AT2G26850.1 [+] show detail - F-box family protein
      E-value: 4e-54; Score: 208.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G26850.1

    Model type
    Protein coding
    Short Description
    F-box family protein
    Computational Description
    F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G32560.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR