K06605

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06605

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06605

Determination of introduced cDNA(s)

  • J013119A09 - Rice Full-length cDNAs - Original: J013119A09

    full reading [+] show sequence

    Nucleotide sequence: J013119A09 - full reading
    GTGGTTTGAC TAGTCCTCTC TCTCCGGGAG AAATTTTGCT CCGGCCGCCT 
    CGGCGTCGCG CTCCGCGGCT CGTAATCTTT CGCGGTGGCC GGCGGCGGGG
    GAGAGGAGGA GGAGGAGGAG GAGGGAGATG AAGGCGTGCG CGAGGGCAGC
    GGGGGAGAGG CTCCCCCTGG TCGGTGCTCC CGCCAGGCAA CCCCTGGCTC
    GGAGTTTTGT TAAGGTCAAC AGATTATCAT CTCAACATGA GACGAAGTCT
    GTGGTATCCT GCTCGGTAAG GGTGTCAGAT GACAAGACAC ACCGAATAGA
    AGCCACGGCA GAACACATCC TTCCAGCAAC AAATGATCAT GTCATGAAAG
    CAATTGACTC AATTAACAGG GGGCAAGTGA TTGCGGTGCC CACCGATACG
    ATTTATGGCT TTGCTTGTGA TGCATGCTCT GCAGAAGCAG TTAATCGTAT
    ATATGAGATC AAAGGACGCG TACAGACACG GCCTCTTGCA ATCTGTGTTG
    CTGATGTCCC AGACATATCA CGGTTTGCTG TTGTGGATCA CCTACCTCAT
    GGCCTGCTTG ATAGTCTACT TCCTGGGCCT GTCACAGTTG TTTTAAAACG
    AGGTAACAAC AGTATATTGG AGAGATCTCT TAATCCTGGT TTGGAAAGCA
    TTGGAGTTCG TGTGCCAGAT TTTGATTTCA TTCGAGCCAT TTCCCGTGGT
    GCTGGAAGTG CGCTTGCACT TACAAGCGCC AACTTAAGCG GGCATCCTAG
    TAGTGTCAAC GTCAAAGATT TTGAGGATCT GTGGCCACAT TGTTCATATG
    TCTTTGATGG TGGAATCCTC CCTTCTGGGC GTGCTGGTTC AACAATTGTG
    GACCTAATAA CACCAGGAGT CTACAAGATA TTGAGAGATG GAAGTTCAAG
    GCAGGAAACG ACAGCGGTGC TCGGCAAGTT TGGCTTTGTT GAAGCTTGGT
    GACAACTTGT TGACCTCATA AAATTGGTAC CATCAAATAC TAGTCCCTTT
    GTTATCTATC TGGCTTCTTG CTTAGTTAGG TGCTGTACCA GAATATAGGT
    TGTTGTTTGT GCTTTTCTTT TTCATATTCT GAATCAGAAG GTGTCAGCTT
    CCTGTTTCAA TGTCAATGCC CTTACAGTAT CACGTGAACT TCGATTGCTA
    CACTACAGTT CATTCTATGG TAGATTACAC TAGCATGCCT ATGCAAGCTA
    AAAGAAATAT TGATTGTAAT GGATTTTAAT

    Gene models with high sequence identity

    1. AT5G60590.2 [+] show detail - DHBP synthase RibB-like alpha/beta domain
      E-value: 2e-78; Score: 290.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D DHBP synthase RibB-like alpha/beta domain 3.5e-43
    superfamily DHBP synthase RibB-like alpha/beta domain 3.8e-49
    HMMPfam Sua5/YciO/YrdC, N-terminal 2.4e-45
    HMMPanther SUA5 1.2e-48
    HMMTigr Sua5/YciO/YrdC/YwlC 1.5e-33
    Coil coiled-coil 0
    ProfileScan Sua5/YciO/YrdC, N-terminal 25.736

    See the detailed result >

    AT5G60590.2

    Model type
    Protein coding
    Short Description
    DHBP synthase RibB-like alpha/beta domain
    Computational Description
    DHBP synthase RibB-like alpha/beta domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sua5/YciO/YrdC/YwlC (InterPro:IPR004388), DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945), Sua5/YciO/YrdC, N-terminal (InterPro:IPR006070); BEST Arabidopsis thaliana protein match is: DHBP synthase RibB-like alpha/beta domain (TAIR:AT3G01920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR