K06619

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06619

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06619

Determination of introduced cDNA(s)

  • J023083G09 - Rice Full-length cDNAs - Original: J023083G09

    full reading [+] show sequence

    Nucleotide sequence: J023083G09 - full reading 
    GAGTTCTCCC CCTTCTCCAT AGAAACCGTG TCCCTCCCCT ACCTTACCCA 
    TCCCCCCCGC TCCTCCCCTT CCCGATCAAC AGCAACAGCG GCGGTCAAAA 
    GCTTCCCCCC GCGACGACCC CCTCCACCTT CCCCCAACCG CCCTCGTAGT 
    CTCCGCGCGC AGGCAGCAGA GTCGCCTTCC CCTCCTCCGG TCGATGCGAC 
    GGGGCTGAAT CGGCCAGGAT CCCGAGGAGG AGGAGGAGCG GACGGCCCGC 
    ATGAGCCTCG CTGGCTCCGC CCTGGAGGCG GCCCTGCAGG CGGTGGGGCG 
    CGGCCTCGAC GCCGCCGGTG ACCACCGGCT GCTCTACTGC AAGGGCACTG 
    GGAGGCTCCT GATGCTGGAC GAGTCCCGCG CGCGGGACCT GACCATCAAC 
    GGCGGCGTCC TCCGCGGGGT GCCCCCCGAC GTCGTGGTGG AGGAGGGCCA 
    CGGCATCCTC GAGCGCATCC GCCAGGTCCC GGGACCCCCA ACCGATGAGC 
    CCGTCGTCTG CAGCTTCCCG AAGATGGCTG AGTGCTTCAA CAGGAAGGCG 
    GGCTTGCTGG AAACAACAGT ACCGCTGGGT TCCTTCAACT CTCTCTTCAG 
    CTTTACTGGT TCTTGGAAGA ATGATGAAGC GGCGACGAAA TCCCTCGCGA 
    TTGATGGCTA CTCCGTGCCT CTGTTTAAAG TTAAGATAAC GAGTGGTGAA 
    TTGTTTCTGC ATGAGAGCGT TAAGCGCGCA ATTCCACATA GTTGGGATCC 
    TTCAGCATTG GCTAGCTTTA TCGAGAACTA TGGTACCCAT ATTATTACTT 
    CTGTTACGGT TGGTGGTAAG GATGAAGTAT ACATAAAGCA GCATTCCTCA 
    TCCCAATTAT CAGAATTGGA GTTCAGAAAT TACGTCAAAG AAATTGGAAG 
    CGAGAGATTC TCAGATGGGG ATAGCAAGTT AAATGCAACT CCCATAAATT 
    ACAGTGAGAA GGATATGACA GTAATCTTCA GAAGGAGGGG TGGTTGTGAT 
    CTTGTTCAGA ATTTTAATGA TTGGATAAAA ACTGTTCAGT CAGCACCAGA 
    TGTCATAGGC ATGACATTTC TCCCTATCGT CTCACTTGTC GGTGATATGC 
    CTGGAAAGAA GCACCTCGCT CGTGCAATTG AACTTTATTT GAAATACAAG 
    CCCCAAATTG AAGAGTTGCA GTATTTCTTG GATTTCCAAG TTCAACTAGT 
    TTGGGCTCCA GTACCACCAG GTATTGCTGG TCAACATAGA AAGGAGCCTG 
    TATGTCCATC ACTTCAGTTT AGTTTGATGG GCCCAAAGCT CTTTGTTAGC 
    ACTGAACAGA TATCTGTTGG GCGTAGACCA GTCACTGGTC TGAAGCTATG 
    CCTGGAAGGA GCCAAACAGA AACGTCTGGC TATTCATTTG CAGCACCTTG 
    GCTCATTGCC AAAAATATTT GTACCTCATT GGGATTCCCA TATCACAATT 
    GGACCGCCAA AGTGGCAAGG CCCTGAAGAG CAGGATAGCC GCTGGTTTGA 
    ACCAATCAAG TGGAGGAATT TTGCTCATGT CAGCACTGCG CCCATAGAGT 
    ACACTGAAAC AAGTATTACA GACCTATCTG GTGTTTATAT TGTAACAGGA 
    GCACAACTGG GCGTGTGGGA TTTTGGTGCG AAGAGTGTAC TCCATCTTAA 
    ACTCTTATTC TCCAGAGTTC CTGGATGCAC AATTAGGAGA TCAGTGTGGG 
    ACCATAGTCC ATCAAGTTCT TTGGTCCATA GGACAGATGA AGCTTCATCA 
    TCCTCTAGTG ATAATGCTAA ACTTGTGAAG ATTGTTGACA TGACCGAGAC 
    ATTGAAGGGC CCACAAGATG CACCTGGCCA TTGGCTGGTA ACAGGAGCAA 
    AGTTGGGGGT CGAGAAGGGC AAGATTGTTG TTCGTGCAAA ATACTCGTTA 
    TTAAACTATT GACCAAATGT TGAAAGCATT CATTCATTCA CTCTGCTATG 
    AAGCATCCTG TTTAAAGATA GCATATGTTC TTTTGTTCAT CATGTATGGT 
    TTTTAATGTA ACATCATATG GATTCGTGCT TCTTGCTGAT TCTGTGAGGG 
    ATTAGCGCCT AGATGTTTGT GTCCGATTAC AAAATATTTG ACCTGGTCTC 
    AGTGATCTGT TAAGTCGTCT CTGTGTGGCA GTAGAAGATG TATATTAGTA 
    TAAATTTTTG AATTGGTATT TTGTTATGCG AAGTTTAACC CAGTGGAGTT 
    GAACTGGGCA ATGCTTT

    Gene models with high sequence identity

    1. AT1G29690.1 [+] show detail - MAC/Perforin domain-containing protein
      E-value: 0; Score: 676.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Membrane attack complex component/perforin (MACPF) domain 8e-29
    ProfileScan Membrane attack complex component/perforin (MACPF) domain 19.403
    HMMSmart Membrane attack complex component/perforin (MACPF) domain, metazoa 2.7e-14

    See the detailed result >

    AT1G29690.1

    Model type
    Protein coding
    Short Description
    MAC/Perforin domain-containing protein
    Curator Summary
    Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity.
    Computational Description
    constitutively activated cell death 1 (CAD1); CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin (MACPF) domain (InterPro:IPR020864); BEST Arabidopsis thaliana protein match is: MAC/Perforin domain-containing protein (TAIR:AT4G24290.2); Has 226 Blast hits to 225 proteins in 30 species: Archae - 0; Bacteria - 6; Metazoa - 14; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR