K06625

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06625

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06625

Determination of introduced cDNA(s)

  • J023049J20 - Rice Full-length cDNAs - Original: J023049J20

    full reading [+] show sequence

    Nucleotide sequence: J023049J20 - full reading 
    GCTCCTCTTC TTCCAATATT ATTTTTTCGC CTTTTCTGTT CGTGTGTTCG 
    TGGTGGAGTT CATCTCGCCT TCCCCTCTTC CGGTCCTCCC ACCGCTCCTC 
    GCCACCACAA ACCGCCGCCG CCTCCTCCTC TCCTATCTGT GCGGAGGAGG 
    TATACCACAC CTTTGGATTT TGGGGAAGCA GTACGTTGAT TGGAAGAAAT 
    GTCAGGAGGT AGGCAATCAT ACTGGTGCTA CCAATGTAGA CAGCGGGTGA 
    GGCCCCGCGG CCAGGATATG GAGTGTCCCT ATTGTGATTC CGGTTTTGTG 
    TCTGAAATGG ATGATGTTGA TGCTCTCATG CGCCACTTTG TTGGGATGGA 
    TCCTGATTTC CATCGTGATC CAAGATTCGG TATCATGGAG GCAATCTCTG 
    CTGTGATGAG GCATGGCATG GCGGGAACGA ACCGGGAAGT TGATGTGAGA 
    GGAAGGCCAA ACATATTTTC TGACCTGGAG ATGGAGTTTG GCTCAGGGCC 
    ATGGTTGCTC TTCCGTGGCC AGCTTCCTGG TCATCTCTCA GAAGACAATG 
    GTTTTGATGT ATTCATCAAT GGACGCCGTG GTGTTGGCAT GCGCAGAGCA 
    AACATTGCAG ACTACTTTGT TGGACCTGGA CTGGATGATC TGATTGAGCA 
    ATTAACTCAG AATGATCGAC GAGGGCCGCC ACCTGCCACT CAATCATCGA 
    TTGATGCTAT GCCTACTGTG AAGATTACAC AGAGGCATCT CAGTGGAGAC 
    TCACATTGCC CTGTCTGCAA GGACAAGTTT GAGCTGGGAT CAGAAGCAAG 
    GGAGATGCCA TGCAAGCATT TATACCACTC TGATTGCATA GTTCCTTGGC 
    TGGAACAGCA CAATTCCTGC CCTGTTTGCC GATATGAGTT GCCACCACAG 
    AGCTCTACTG GTGCTAGCTG CTCGCGCACA AGATCAACCA ACCAAAGTCA 
    GAGTTCAAGT AGCAATGGGA GAACCAATGG ACGTCAAAGG AGAAGGAATC 
    CGTTCTCGTT CCTATGGCCT TTCCGATCAT CAAGCTCTAG CTCTCGTTAG 
    ATTAGCCTGG TAATCTGGTT GGAGTCCTCA AGACTGTTTA ATCGAAGATG 
    CTCATAAAAT GGGTGTTATG CATGGCATCT TATCGTCCAA TCTGTAATGT 
    ATGGCTTGTT ATGATCACCA CGGAATGCTT TTCCTTGCAA GTATATCCTT 
    CCACAGCTTC ATATCAGATA CTTCTTTTAC C

    Gene models with high sequence identity

    1. AT2G40830.3 [+] show detail - RING-H2 finger C1A
      E-value: 3e-65; Score: 246.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RING ZINC FINGER PROTEIN 1.6e-46
    superfamily RING/U-box 1.1e-15
    ProfileScan Zinc finger, RING-type 12.209
    Gene3D no description 2.1e-13
    HMMPfam Zinc finger, C3HC4 RING-type 6.8e-07
    HMMSmart Zinc finger, RING-type 1.7e-07

    See the detailed result >

    AT2G40830.3

    Model type
    Protein coding
    Short Description
    RING-H2 finger C1A
    Curator Summary
    Encodes a putative RING-H2 finger protein RHC1a.
    Computational Description
    RING-H2 finger C1A (RHC1A); FUNCTIONS IN: zinc ion binding; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G56580.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR