K06642

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06642

Determination of introduced cDNA(s)

J033086M14 - Rice Full-length cDNAs - Original: J033086M14

full reading [+] show sequence

GGAAGACCAG AGAGAAGACG AGAGGCGATC GCAGTGGAGT GGAGTGAAGT 
ACTAGCAGTA TTAAAACCAG CAGCAAGCGA GAGAGAGGCC ACCAACCACT 
TCCTCCTCCA AGAAACCACC CCCACCACGA GCACGAGCAC GAGCAACCAT 
GGCGGTGGCA GAGGGAGCTG CGACTGCGAG CTACGGGCCA TGACTGCGGC 
GAGTTCTTGC TGGGTTGTTG TTGTACAAGC AGCGACGAGG AGGAGGGGAG 
CAGAGGAGGA GGAGGCGGAG GGATGGCAGC GGCGGCGGTG GGGGGAAGGG 
GGGAGAGGCT GTCGTCCTCC TCCCCGACGG CGGCGGCGCC GCAGGTGGAC 
GCCGGGAAGT ACGTCCGGTA CACGCCCGAG CAGGTGGAGG CGCTGGAGCG 
GGTGTACACC GAGTGCCCCA AGCCCAGCTC ACTCCGCCGC CAGCAGCTCA 
TCCGGGAGTG CCCCATCCTC AGCAACATCG AGCCCAAGCA GATCAAGGTC 
TGGTTTCAGA ATCGCAGATG CCGGGAGAAG CAGCGCAAGG AGGCCTCCCG 
GCTGCAAACT GTGAACCGGA AGCTGAATGC GATGAACAAG CTGTTGATGG 
AGGAAAATGA CCGGCTGCAG AAGCAGGTGT CCCGTCTCGT CTACGAGAAC 
GGCTACATGC GGACTCAACT GCACAATCCT TCTGCAGCCA CCACAGATAC 
AAGCTGTGAG TCTGTGGTGA CAAGTGGTCA GCACCATCAA CAGCAAAACC 
CAGCAGTTCT GCATCCGCAA AGGGATGCGA ACAACCCAGC AGGTCTTCTC 
GCTATTGCTG AGGAGACCTT GGCAGAGTTC ATGTCGAAGG CGACAGGAAC 
TGCTGTCGAA TGGGTGCAAA TGGTTGGGAT GAAGCCTGGT CCGGATTCCA 
TTGGAATCAT CACTGTTTCG CACAATTGCA GTGGCGTAGC AGCACGAGCT 
TGCGGCCTGG TGAGCCTTGA GCCCACAAAG GTTGCAGAGA TCCTCAAGGA 
TCGCCCCTCT TGGTACCGTG ATTGCCGATG CGTAGATATC ATCCATGTTA 
TCCCTACGGG TAACGGCGGA ACCATTGAGC TAATCTACAT GCAGACACAT 
GCACCGACAA CTTTGGCGGC ACCACGCGAC TTTTGGACTC TCCGCTACAC 
AAGTGGACTT GAAGATGGGA GTCTTGTGAT CTGTGAAAGG TCATTGACTC 
AGTCCACTGG TGGCCCATCT GGGCCTAACA CTCTGAATTT TATCAGAGCC 
GAGGTACTTC CCAGTGGTTA TCTGATTCGA CCATGTGAGG GAGGTGGCTC 
CATGATTTAC ATTGTTGATC ATGTTGATTT GGATGCTTGG AGTGTGCCTG 
AGGTTCTTCG ACCGCTCTAT GAATCTCCAA AGATCCTTGC ACAGAAGATG 
ACCATTGCAG CATTGCGACA CATTAGGCAA ATTGCGCATG AGTCAAGCGG 
TGAAATCCCC TACGGTGCTG GTCGCCAGCC CGCTGTTTTC AGGACCTTCA 
GTCAAAGGCT CAGCAGAGGT TTCAATGATG CTGTTAGTGG ATTTCCAGAT 
GATGGGTGGT CTTTGTTGAG CAGTGATGGT AGTGAGGACA TTACAATTTC 
AGTAAACTCG TCTCCAAACA AGCTTGTTGG ATCCCATGTC AGCCCGAACC 
CTCTGTTTTC TACTGTTGGA GGTGGCATCT TGTGCGCAAA GGCATCAATG 
CTACTTCAGA ATGTACCTCC TGCTCTACTT GTGCGATTTC TGAGGGAGCA 
TCGTTCTGAA TGGGCTGATC CTGGTGTTGA TGCTTATTCT GCTGCTTCTT 
TGCGAGCCAG CCCATATGCA GTTCCAGGCT TAAGGACCAG CGGGTTTATG 
GGCAGTCAGG TTATACTACC CCTCGCTCAT ACCTTAGAGC ATGAAGAGTT 
CTTGGAGGTT ATTAGGCTCG AAGGACATGG TTTCAGCCAT GATGAGGTGC 
TTCTATCACG GGATATGTAC CTTCTACAGC TTTGCAGCGG GGTTGATGAG 
AATGCTACTA GTGCATCTGC ACAGCTTGTC TTTGCTCCTA TTGACGAATC 
TTTTGCTGAT GATGCACCAC TTTTACCCTC AGGATTCCGT GTGATACCAC 
TAGATACAAA AATGGATGGG CCATCTGCAA CACGCACGCT CGACCTTGCA 
TCCGCCCTTG AGGTTGGACC AGGTGGAGCT TCGCGTGCTT CAGTTGAAGC 
ATCTGGCACA TGTAACAGAT CAGTCCTGAC CATTGCTTTC CAATTCTCAT 
ACGAGAACCA CCTTCGTGAG AGCGTGGCGG CAATGGCTAG GAGTTATGTC 
AGAGCTGTGA TGGCATCCGT GCAGAGGGTG GCTGTGGCAA TAGCTCCTTC 
TCGACTTGGA CCCCAGATCG GAATGAAGCA CCCTCCAGCC TCTCCTGAGG 
CGCTTACACT TGCTAGCTGG ATTGGTAGGA GCTATAGGGC TCACACCGGA 
GCAGATATCC GTTGGTCTGA TACCGAAGAT GCCGATTCTC CCCTGGCGCT 
CCTGTGGAAG CACAGCGACG CAATACTGTG CTGTTCTCTG AAGCCTGCTC 
CTATGTTCAC CTTCGCCAAC AATGCCGGCC TCGACATCCT TGAGACGACG 
CTGGTCAACC TCCAGGACAT CTCGCTCGAG ATGATCCTGG ATGACGAGGG 
CCGGAAGGCG CTGTGCTCGG AGTTCCCCAA GATCATGCAG CAGGGTTTCA 
CCTATCTCCC TGGAGGCGTC TGCAAGTCGA GCATGGGGCG GCAGGCATCG 
TATGAGCAGG CGGTGGCGTG GAAGGTTCTT AGCGACGACG ACGCGCCGCA 
CTGCCTCGCC TTCATGCTCG TCAACTGGAC CTTCATGTGA TCCACCATCC 
ATGGTTTCCA GCTTCCAGCT AGTGCTTTTG CTTTTGTGCC ATTGTGGCAA 
ACTGAACAAA GACCTGAATA CCACCACCGT ATTGTATTAA ACATATGCGT 
CCATACATGC ATGGTGCTTG CTTTATCCTA GCTAGTGCTA GCACCTGTGT 
GTATGGTCTC TCCATGTTTG AAGCTTAAAA TTTTAGAACC CTGGTTTTTT 
TTTTTTTCTG CTGCTGTGTG GATGAACAAG TTTCAGGACC TATGTATCTC 
TATCTATCTA TGCTAATGCT ATGAATTGTG TGATGTGTGT

Gene models with high sequence identity

AT2G34710.1 [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
E-value: 0; Score: 999.99

InterPro Scan Digest

Program	Description	E-value
ProfileScan	Homeobox	15.305
ProfileScan	Lipid-binding START	26.245
HMMPfam	MEKHLA	2.1e-59
HMMPfam	Lipid-binding START	2.5e-49
HMMPfam	Homeobox	9.3e-16
HMMSmart	Homeobox	0.0000000000000063
HMMSmart	Lipid-binding START	7.7e-44
superfamily	Bet v1-like	8.2e-29
superfamily	Homeodomain-like	0.0000000000000016
Gene3D	Homeodomain-related	0.0000000004
Gene3D	no description	0.000019
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPanther	HOMEOBOX PROTEIN	0.000000016

See the detailed result >

AT2G34710.1

Model type: Protein coding
Short Description: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Curator Summary: Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA.
Computational Description: PHABULOSA (PHB); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT1G30490.1); Has 3393 Blast hits to 3288 proteins in 275 species: Archae - 0; Bacteria - 20; Metazoa - 905; Fungi - 114; Plants - 2320; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Link: InterPro Scan - TAIR