K06647

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06647

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06647

Determination of introduced cDNA(s)

  • J013099F15 - Rice Full-length cDNAs - Original: J013099F15

    full reading [+] show sequence

    Nucleotide sequence: J013099F15 - full reading
    AGTAGTGGGA AATTAGTGTT ATTGGACAAG CTGTTGGTAA GACTGCGGGA 
    GACTAATCAT CGTGTGCTTA TCTTCTCTCA GATGGTTAGG ATGTTGGACA
    TCCTTGCTGA GTATCTATCC CTCCGAGGAT TCCAGTTTCA GAGGCTTGAT
    GGCAGTACGA GAGCAGATCT TCGTCACCAG GCCATGGAGC ATTTTAATGC
    TCCTGGAAGT GATGACTTCT GTTTTCTTCT GTCTACACGT GCTGGTGGGC
    TTGGTATTAA TCTTGCAACA GCAGATACCG TGATCATTTT TGATTCAGAC
    TGGAATCCGC AAAATGATTT ACAGGCAATG AGTAGGGCAC ACAGGATTGG
    GCAACAAGAA ACTGTTAACA TATATCGTTT CGTGACATGC AAAAGTGTTG
    AAGAGGATAT ATTGGAACGT GCAAAGAAAA AAATGGTTCT TGATCACCTA
    GTGATTCAGA AGCTAAATGC TGAGGGCAGG CTCGAGAAGA AAGAATCAAA
    AAAAGGTGGT TCCATGTTTG ACAAGAATGA ACTTTCAGCG ATATTGAGAT
    TTGGAGCAGA AGAGTTATTC AAAGAAGATA AGACTGATGA AGAGACCAAG
    AAGAAGCTTG AAAGCATGGA CATTGATGAA ATTCTCGAGA GAGCTGAGAA
    AGTTGAAACA AAGGGTGGTG AAGGGGAGGA AGGAAATGAA CTTCTTAGTG
    CATTCAAGGT TGCCAACTTT TCTAGTGGTG AGGATGATGC CACATTCTGG
    AGCAGATTAA TTCAACCAGA TGCTTCAGAT ATGGTTGAGG AGACTTTAGC
    ACCTCGTGCT GCAAGAAATA AGAAGAGCTA TGTTGAAGAT CACCAACTTG
    ATAAGAATAG CAACAGGAAA AGGCGAGGAA TCGATGCACA AGAAAAGCCA
    AGGAGGCGTT CTAGCAGAAC AATGGACACA GCTGTGTCAT TACCACTCAT
    AGATGGTTCA GCACATCAAG TACGAGAATG GTCATTTGGA AATTTGTCAA
    AGAAAGATGC TACCCGATTT GTTCGAGCGG TTAAAAAATT TGGAAACCCA
    AGCCAAATTG GGTTAATCGT GGATGATGTT GGTGGTGCAA TAGCAAAGTC
    TTCGGTTGAT CAACAGCTTG AGCTGTTTAC TCTACTCATT GAGGGTTGTC
    AAGATGCTGT TAAAAATAAT ATGGATGCCA AGGGCACAGT GTTGGATTTT
    TTTGGTGTAG CAGTTAAGGC GCATGAGTTG ATAGCCCGTG TGGAAGAGCT
    ACAGTTCCTG GCAAGGCGCA TTGCACGTTA CAAAGATCCA GTTAGACAAT
    ACCGGATCCA GGCACCTTAC AAAAAGCCAC AGTGGTCAGC AAGCTGTGGT
    TGGACTGAAA CTGATGATGC AAGATTGATG GTTGGAATTC ATTGGTATGG
    CTATGGAAAT TGGGAGAAGA TACGATTAGA TCCAAAACTT AGCTTGACAG
    CGAAAATTGC ACCAGCAACC CTTGGTGAAC GAGAGACGTT TTTACCGCGT
    GCACCGAACT TGGATAATCG TGCTAGTGCT CTTCTACAAA AGGAATTTGC
    CAATCTTCGT GGTAAGAGCT CGAAAGCCAA GGGAGGTCCT CGTCAAGCAA
    TTGATAATGA AAGCAATGGT GGAGCTCGTT CATTAAGAGG CCGGCAAAAA
    GACACAAAAA TAAAAGAAGA TAATAATTCA ATTAAAGATG ACTTTAAGAA
    ACGCAAGGTG GTGGAACCTG AAGCAAGGGA AGAAGGTGAA ATTTCAGAAT
    CTGAAGCAGA GACTAAATAT CGTCAGGACA AGGAAGAAAA GTGGCTGGAA
    TGGTGTTCTG AAGTTTTGGA TGACGAGCAG GAGATATTAA AGCGGCTGGA
    TAGGCTTCAG AATACTAGTG TAAATCTGCC AAAGGAAAAG GTTCTTTC

    Gene models with high sequence identity

    1. AT2G13370.1 [+] show detail - chromatin remodeling 5
      E-value: 0; Score: 679.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan DNA/RNA helicase, C-terminal 20.169
    HMMPfam DNA/RNA helicase, C-terminal 8.6e-16
    Gene3D no description 9.8e-13
    Coil coiled-coil 0
    superfamily P-loop containing nucleoside triphosphate hyd 5.2e-31
    superfamily Homeodomain-like 1.7e-20
    HMMPanther CHROMODOMAIN HELICASE DNA BINDING PROTEIN 4e-126
    HMMPanther ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATE 4e-126
    HMMSmart DNA/RNA helicase, C-terminal 7.2e-25

    See the detailed result >

    AT2G13370.1

    Model type
    Protein coding
    Short Description
    chromatin remodeling 5
    Computational Description
    chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to 28045 proteins in 2467 species: Archae - 189; Bacteria - 9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses - 447; Other Eukaryotes - 10320 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR