K06703

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06703

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06703

Determination of introduced cDNA(s)

  • J033122M22 - Rice Full-length cDNAs - Original: J033122M22

    full reading [+] show sequence

    Nucleotide sequence: J033122M22 - full reading 
    GATCTCTCTC TCTTCCAAAA CCCTAACCCT AGCGGCGGGC GGGAGCGGCG 
    GAGGAGGAGG GCGCGGCGGC GGTGGGGTGG TAGTGGTGTT GGGTGGAATG 
    GACGGAGGCG GGGCGCACCG CACGCCGGAG GACGTGTTCC GGGACTTCCG 
    CGCGCGGCGG GCCGGGATGA TCAAGGCGCT GACCACAGAT GTGGAGAAGT 
    TCTACCAGCA GTGCGACCCA GAGAAAGAGA ATTTGTGTTT ATATGGTCTT 
    CCCAATGAGA CATGGGAAGT GAACTTGCCT GCTGAGGAGG TTCCTCCAGA 
    GCTTCCAGAA CCAGCTCTGG GAATTAATTT TGCTCGGGAT GGGATGGATG 
    AGAAAGATTG GCTGTCACTT GTTGCGGTTC ATAGTGATAC CTGGCTGCTA 
    GCAGTAGCCT TTTACTTTGG AGCAAGATTC GGGTTTGACA AAGAATCCAG 
    GAAACGGCTT TTTAGCATGA TTAACAACCT TCCAACCATA TATGAGGTTG 
    TCACTGGGAC TGCAAAGAAG CAGAGCAAAG AAAAAACCCC CAAGACCAGT 
    GGCAAGAGCA ATAAATCCGG CACGAAGCCA TCGCGCCAGC CGGAACCCAA 
    CTCTAGGGGT CCAAAGATGC CACCTCCGAA GGATGAGGAT GATAGCGGAG 
    GTGAGGAAGA GGAGGAAGAA GAAGATCACG AAAACACATT ATGTGGTGCA 
    TGTGGTGACA ACTATGGACA GGATGAGTTC TGGATCTGCT GCGATGCTTG 
    TGAGACATGG TTCCACGGTA AGTGTGTCAA GATAACCCCT GCCAAGGCTG 
    AGCACATCAA GCACTACAAG TGCCCGAACT GCAGCAGTAG TAGCAAGAGA 
    GCCAGAGCTT GATGGTGGAT CCCTCTATGG CTTATGTCTG AAGAACCAAG 
    AATTTGACTC GCTGTAAAGA CCCTCATGAG ATAGAATGCC CAATGGATAT 
    GCATTCAGCT GTTGGTTTTC AGTTTAGGAC CAGCTTTAGG GTCTTTAATG 
    TGTTGTTTGG TGTATGTCAA TGGCATCAAT TCTAGATTTT CTGTTAGTAG 
    TAGAAACTAA CTGTAATAGC TTATGCTTCT TCAAGCCCTT CTAAGTGCAC 
    CTGTACTGGA CTCTTTAGTG TTTTAGATTT GAATTGTGTA TTTGTGTCAA 
    ACATGTACTC TTGTAGTTTG TTAAAAATTG CTTGTGGTCA TTTATTCTC

    Gene models with high sequence identity

    1. AT1G14510.1 [+] show detail - alfin-like 7
      E-value: 2e-83; Score: 306.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, PHD-finger 9.445
    superfamily Zinc finger, FYVE/PHD-type 0.0000000000079
    PatternScan Zinc finger, PHD-type, conserved site 0
    Gene3D no description 5.1e-16
    HMMPfam Protein of unknown function DUF3594 5.1e-82
    HMMPfam Zinc finger, PHD-finger 0.00000000064
    HMMPanther CPG BINDING PROTEIN 0.000000000008
    HMMSmart Zinc finger, PHD-type 0.0000000027

    See the detailed result >

    AT1G14510.1

    Model type
    Protein coding
    Short Description
    alfin-like 7
    Curator Summary
    AL7 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.
    Computational Description
    alfin-like 7 (AL7); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 6 (TAIR:AT2G02470.1); Has 1825 Blast hits to 1776 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 841; Fungi - 323; Plants - 580; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR