K06706

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06706

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06706

Determination of introduced cDNA(s)

  • J033149E23 - Rice Full-length cDNAs - Original: J033149E23

    full reading [+] show sequence

    Nucleotide sequence: J033149E23 - full reading
    GTCAAAGAGG CAGACGCGCA GCTGAGGAGG AGAAGCGCAC GCAGCCACCG 
    CGAGATCTCC TCACCTCCAT CTCCATCTCC ATCTCCATCT CCGGCGGCGA
    GATCCCCACC GAATCGGATC GGATCGGATC ATGGGGGGGA AGGAGCTGAG
    CGAGGAGCAG GTGGCGTCGA TGCGGGAGGC GTTCTCCCTC TTCGACACCG
    ACGGCGACGG CCGGATCGCG CCGTCGGAGC TCGGCGTCCT GATGCGCTCC
    CTCGGCGGGA ACCCCACCCA GGCGCAGCTC CGCGACATCG CCGCGCAGGA
    GAAGCTCACC GCGCCCTTCG ACTTCCCGCG CTTCCTCGAC CTCATGCGCG
    CCCACCTCCG CCCCGAGCCC TTCGACCGCC CGCTCCGCGA CGCCTTCCGC
    GTCCTCGACA AGGACGCCTC CGGCACCGTC TCCGTCGCCG ATCTCCGCCA
    CGTCCTCACC TCCATCGGCG AGAAGCTCGA GCCCCACGAG TTCGACGAGT
    GGATCCGCGA GGTCGACGTC GCCCCCGACG GCACCATCCG CTACGACGAC
    TTCATCCGCC GCATCGTCGC CAAATAATTT GTCATTTCTG GTTTTCTCCC
    CTCTCTCCCT CTCTCTCCCC CTCTCAGGAT CCACAGTTTG ACACATAATA
    ACTCTCTCTT GCTTGTCGTT TCCTTACCTA TCATGTGATC TCTCCTGATT
    TGTGCTTTGC TTGCTCTCTA TTTTGTGTTT TCATTCCGGT GTGATTTGGA
    CAACCTAGGG TTTGGATAAT GGTGTGATTA ATCGATTGAT GGATGGATCT
    GATTAATGAT GCTTTGCGTT TCGCTCTGTT CAATACTGCA ATGTAAATTG
    TGGATCTATC TATCATTCAA AATATGTGGA TCTGGCTTAT TATCGG

    Gene models with high sequence identity

    1. AT1G12310.1 [+] show detail - Calcium-binding EF-hand family protein
      E-value: 4e-60; Score: 228.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam EF-hand 0.0000024
    HMMPanther CALMODULIN 3.1e-66
    HMMPanther CALMODULIN 3.1e-66
    HMMSmart Calcium-binding EF-hand 0.000017
    HMMSmart Calcium-binding EF-hand 0.037
    HMMSmart Calcium-binding EF-hand 2.8
    Gene3D EF-hand-like domain 2.5e-31
    superfamily EF-hand 1.1e-37
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    ProfileScan EF-HAND 2 13.76
    ProfileScan EF-HAND 2 11.863
    ProfileScan EF-HAND 2 6.758

    See the detailed result >

    AT1G12310.1

    Model type
    Protein coding
    Short Description
    Calcium-binding EF-hand family protein
    Computational Description
    Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G62820.1); Has 15156 Blast hits to 13043 proteins in 1439 species: Archae - 0; Bacteria - 35; Metazoa - 6065; Fungi - 3861; Plants - 3197; Viruses - 0; Other Eukaryotes - 1998 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR