K06706

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06706

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06706

Determination of introduced cDNA(s)

  • J033149E23 - Rice Full-length cDNAs - Original: J033149E23

    full reading [+] show sequence

    Nucleotide sequence: J033149E23 - full reading 
    GTCAAAGAGG CAGACGCGCA GCTGAGGAGG AGAAGCGCAC GCAGCCACCG 
    CGAGATCTCC TCACCTCCAT CTCCATCTCC ATCTCCATCT CCGGCGGCGA 
    GATCCCCACC GAATCGGATC GGATCGGATC ATGGGGGGGA AGGAGCTGAG 
    CGAGGAGCAG GTGGCGTCGA TGCGGGAGGC GTTCTCCCTC TTCGACACCG 
    ACGGCGACGG CCGGATCGCG CCGTCGGAGC TCGGCGTCCT GATGCGCTCC 
    CTCGGCGGGA ACCCCACCCA GGCGCAGCTC CGCGACATCG CCGCGCAGGA 
    GAAGCTCACC GCGCCCTTCG ACTTCCCGCG CTTCCTCGAC CTCATGCGCG 
    CCCACCTCCG CCCCGAGCCC TTCGACCGCC CGCTCCGCGA CGCCTTCCGC 
    GTCCTCGACA AGGACGCCTC CGGCACCGTC TCCGTCGCCG ATCTCCGCCA 
    CGTCCTCACC TCCATCGGCG AGAAGCTCGA GCCCCACGAG TTCGACGAGT 
    GGATCCGCGA GGTCGACGTC GCCCCCGACG GCACCATCCG CTACGACGAC 
    TTCATCCGCC GCATCGTCGC CAAATAATTT GTCATTTCTG GTTTTCTCCC 
    CTCTCTCCCT CTCTCTCCCC CTCTCAGGAT CCACAGTTTG ACACATAATA 
    ACTCTCTCTT GCTTGTCGTT TCCTTACCTA TCATGTGATC TCTCCTGATT 
    TGTGCTTTGC TTGCTCTCTA TTTTGTGTTT TCATTCCGGT GTGATTTGGA 
    CAACCTAGGG TTTGGATAAT GGTGTGATTA ATCGATTGAT GGATGGATCT 
    GATTAATGAT GCTTTGCGTT TCGCTCTGTT CAATACTGCA ATGTAAATTG 
    TGGATCTATC TATCATTCAA AATATGTGGA TCTGGCTTAT TATCGG

    Gene models with high sequence identity

    1. AT1G12310.1 [+] show detail - Calcium-binding EF-hand family protein
      E-value: 4e-60; Score: 228.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam EF-hand 2.4e-06
    HMMPanther CALMODULIN 3.1e-66
    HMMPanther CALMODULIN 3.1e-66
    HMMSmart Calcium-binding EF-hand 1.7e-05
    HMMSmart Calcium-binding EF-hand 0.037
    HMMSmart Calcium-binding EF-hand 2.8
    Gene3D EF-hand-like domain 2.5e-31
    superfamily EF-hand 1.1e-37
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    ProfileScan EF-HAND 2 13.76
    ProfileScan EF-HAND 2 11.863
    ProfileScan EF-HAND 2 6.758

    See the detailed result >

    AT1G12310.1

    Model type
    Protein coding
    Short Description
    Calcium-binding EF-hand family protein
    Computational Description
    Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, nucleus, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G62820.1); Has 15156 Blast hits to 13043 proteins in 1439 species: Archae - 0; Bacteria - 35; Metazoa - 6065; Fungi - 3861; Plants - 3197; Viruses - 0; Other Eukaryotes - 1998 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR