K06711

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06711

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06711

Determination of introduced cDNA(s)

  • J033148J17 - Rice Full-length cDNAs - Original: J033148J17

    full reading [+] show sequence

    Nucleotide sequence: J033148J17 - full reading
    GATGTGGTAG GAGGATGGCG TTATATGTTT GGTTTTGGTG CTCCACTGGC 
    AGTAATAATG GCTATTGGTA TGTGGAATTT ACCGCCTTCA CCAAGATGGC
    TTCTTCTCAG GGCAGTTCAA GGAAAGGCGT CAGTGGAAGA TAACAAAAAG
    AAGGCAATTC AGGCATTGAG ATCACTGAGG GGGCGCTTTA GGAGTGACAG
    GGTCTTAGCA GATGAGATTG ATGATACCCT TCTCTCTATT AAGGCTGCTT
    ATGCAGAACA AGAATCTGAA GGGAACATTT GGAAGATGTT TGAGGGAGCT
    AGCTTGAAGG CACTCATCAT TGGAGGAGGA CTGGTTCTCT TCCAGCAGAT
    AACAGGCCAG CCAAGTGTTC TATACTATGC AACTTCCATT CTTCAGACTG
    CTGGGTTTGC AGCTGCATCT GATGCTGCCA AAGTATCAAT TTTGATTGGG
    TTGTTCAAGT TGTTGATGAC AGGTGTTGCA GTATTTAAAG TTGACGATCT
    TGGAAGGCGT CCACTACTTA TAGGAGGCAT TGGTGGAATA GCTGTTTCAC
    TGTTCTTATT AGCAGCTTAC TACAAGATTC TGAACAGCTT CCCTTTTGTC
    GCTGTTGGTG CTTTACTTCT GTATGTCGGT TCTTACCAGG TATCGTTTGG
    TCCAATAAGT TGGCTAATGG TTTCTGAGAT CTTCCCACTC CGAACAAGAG
    GACGTGGGAT CAGCCTTGCA GTACTTACAA ATTTCGGCTC AAATGCACTG
    GTGACATTTG CCTTTTCACC CTTGCAGGAA TTCCTTGGAC CAGCCAATAT
    TTTCCTTCTA TTTGGAGCCA TATCGTTGCT CTCCCTTGTG TTTGTCATCC
    TAAAAGTTCC AGAGACTAAA GGACTTACAT TGGAGGAGAT CGAATCCAAG
    CTCCTGAAGT AAGCTCACTG GTACTCAAGT TGTATGTGTG TGTGTGTTTT
    TTTTGAGGGC AAGTTGCTAT GTGTTCATTA GATGAGGTTG ATACGTGTCG
    GTGTAAATTT GTTCAGTCGA TTTATGTGAT TAATATAGTC GTACATGTAG
    TATTTTGTAC ATGTAAATTC TTGTTTGGAC TAAAAATATT CTAGAGAAAT
    CCAAAAAAGC TGTTCTTG

    Gene models with high sequence identity

    1. AT5G59250.1 [+] show detail - Major facilitator superfamily protein
      E-value: 3e-118; Score: 422.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR11600:SF83 1.59998835313659e-80
    FPrintScan Sugar/inositol transporter 4.09999599045784e-10
    FPrintScan Sugar/inositol transporter 4.09999599045784e-10
    FPrintScan Sugar/inositol transporter 4.09999599045784e-10
    HMMPfam General substrate transporter 5.40000000000002e-55
    HMMPanther PTHR11600 1.59998835313659e-80
    ProfileScan MFS 0
    superfamily Major facilitator superfamily, general substrate transporter 3.39999972437687e-35

    See the detailed result >

    AT5G59250.1

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G17010.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR