K06727

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06727

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06727

Determination of introduced cDNA(s)

  • J033034H04 - Rice Full-length cDNAs - Original: J033034H04

    full reading [+] show sequence

    Nucleotide sequence: J033034H04 - full reading 
    GAGTCTTCCC GTTCCCCTCG GCGTCGACTC CCCCCCAAAC TCCGTCTCCT 
    CGCGCGAGTT CGCCCGCCGC CTGCGCCGAT CTCCATCCGG CGAGGCGCCG 
    CCGTCCGCCC GGCTGCTTCC GCCGATTGCA TGATTCCACC ACAATCAGAA 
    ATTGTAGGTG AGAACAACGC ATCCAAGAGT GCTGCTAAAG AGCAGATTCT 
    TTCTAGTACA AATGAGAAAA TGACTACTAG TGTTCCCCAG GGTGCTAGCT 
    CCTCAAAATC ACCAAAGGGT GCACAGGAGA AGGCTAGTTT TTTGGGTAAA 
    GGTGGAGAAC AACCTTTCTA CCAACCCAAT GTGTACGCAC CTCAGCCACA 
    AACAATCTAT TCTGGAGGAT ACCTGAACCA TTTGGGCCAA TGGGAAGAAT 
    ACCCCCATTA TGTCAATATG GAAGGACTCC ATTCTGTATC ACCTGGAATT 
    TACAACGACA ACCAGTCAAT CATGTTATCT CCTGGATATG CAAACAACCC 
    TCAAATGATG TATGGAGCTT ATTCTCCTGG CGTTGGAGAT GGCCAGCCAT 
    ACCTCCCATT GCACTTTCCC TTCTCAAGTC CTTACTACCA GCCACCAGCC 
    TCTCCTAGCA TGGGATACTC TAATTCCGCC ACTGGAATGT CTCAAGGAGA 
    TCCTATGCTG CAGCAGGAGT ACTTCCTTCC TGACGGCCTT CTCTACTCGC 
    CAACACCAGG TTATCATCAA CCATTCGGGT CTTTTGACAG AGCATCCACC 
    CAACCAAGCA GCACTCCTGG TTTGTTTGGT CAAGGGAACA CACCGCTGGC 
    TTTTGGAATG CATCATGGGT CAATGTATGC CCCTGGATCC TATAAGCCAC 
    GCCAACAAGG TGGTAAGTTT GGAGGCACTA CTCCAAGTTG GAGTTCTGGT 
    CGCAGATTTG GTACTTTTGA CTTAAGCGCC AATCAACAGA AAGGGAGCAT 
    GCCATTTGGT ATTCAGAATG GTGCTCTTGA GTTCCTGAAT GAGCAAAACC 
    GTGGGCCACG TGCTACAAAA CCAAAGAAAC AAGACACAGA GAACTCTTCA 
    ATAGATGACA AAAATGAGAA AAATGTTCCT CTGGTTGATA GTGAACTGTA 
    TAATCGCCCT GATTTTGTCA CTGAATACAA GGATGCAAAA TTTTTTGTAA 
    TAAAGTCCTA CACTGAGGAC CATGTACATA GGAGCATTAA GTACAATGTT 
    TGGGCCAGTA CAGCTAGTGG GAATAGAAAG CTGGATTCTG CTTATCGCTT 
    GGCCAAAGAA AAAGAAGACT ATTGCCCTAT TTTTCTATTT TTCTCGGTTA 
    ATGGCAGTGG TCAGTTCTGT GGTGTAGCTG AGATGATTGG ACCCGTCGAT 
    TTTGACAAAA GTGTCGATTA TTGGCAGCAG GACAAGTGGA GTGGCCAGTT 
    CCCTGTGAAG TGGCACATTA TTAAGGATGT CCCGAACAAC CTGCTGCGGC 
    ACATCATTCT TGAGAACAAT GACAACAAAC CTGTAACTAA TAGCAGGGAC 
    ACCCAGGAGG TGAAGCTGGA ACATGGTCTG CAGATGTTAA CTATCTTCAA 
    GAACCATGAA TCGGAGACGA ACATTCTTGA AGACTTTGAC TTCTATGAGC 
    AGCGGGAGAA AGCCTTGCAG GAGAATAGAC GTCAGCAGCA GCCTGCCAGC 
    CCAGAGCTGC AGAAACCAGC AGAGAATAAG GCCCTAGGAG AACTTATGGC 
    CCACATCTCA GACACATTTG GTCAGACTGT CCAGCTAAAA GAAACTGAGA 
    ATGGCGAAAG CAAGCCTGCA GTTGAGGGTG TTTCTTCAGC TGATGAAGCG 
    TCCACCGCAA CCACCAAGGC TGAAGATGGA ACGGCGAGCA CGAACGCTAG 
    CCCTGTGGAG TAAAGCAGTC GATTTTCTCC CCCATATCAT TTACTAATTT 
    GGAGCAGCAG TTGGATCATA TGATGCTCTT ATGGAGGTGA GAAGGGTTAA 
    AAGAGCAGGT TGGTTATGTC AGGTGTTGCT GCTGCTTCAG TTGTACAACA 
    TTATAGGCTT TGTTTCACCT CCCTTTAGGT TATAATTCCA ATTTCATAGT 
    TCCGAAATTC TTGCTGTCAA TCTTCTTTCC TGTCTCAATG TGTTCCCTTT 
    CGCTTTTACT TGTGTTGCGT CATGAATGCT GTTCAATGTG AGTGGTGGTG 
    TTTAGCCATA AGAAGCTGCA TAATTATGCT GCCGGTAGCT TTCCAGTCTC 
    ATGTCTCTCT GGTTCCATCC TTTGTATATT TGCAGAGCGC CATTCTTTTC 
    TTGTGAACTT GGAGCTTCTT AAGCTCTCAT GTAGCACAAT TCTGTAGCAA 
    AGCTCCTTTG GTCACGCGGT ACTTCATGAC TGAAATATTC AACTTGTGAT 
    ACAAGGGGAA CCTAATTGGG AAGCATTCAG AACCG

    Gene models with high sequence identity

    1. AT3G13060.2 [+] show detail - evolutionarily conserved C-terminal region 5
      E-value: 3e-114; Score: 409.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan YTH domain 50.966
    HMMPfam YTH domain 7.2e-30
    HMMPanther YTH DOMAIN-CONTAINING 6.6e-106
    HMMPanther YTH domain 6.6e-106

    See the detailed result >

    AT3G13060.2

    Model type
    Protein coding
    Short Description
    evolutionarily conserved C-terminal region 5
    Computational Description
    evolutionarily conserved C-terminal region 5 (ECT5); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.4); Has 1288 Blast hits to 1234 proteins in 189 species: Archae - 0; Bacteria - 12; Metazoa - 605; Fungi - 140; Plants - 385; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR