K06727

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06727

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06727

Determination of introduced cDNA(s)

  • J033034H04 - Rice Full-length cDNAs - Original: J033034H04

    full reading [+] show sequence

    Nucleotide sequence: J033034H04 - full reading
    GAGTCTTCCC GTTCCCCTCG GCGTCGACTC CCCCCCAAAC TCCGTCTCCT 
    CGCGCGAGTT CGCCCGCCGC CTGCGCCGAT CTCCATCCGG CGAGGCGCCG
    CCGTCCGCCC GGCTGCTTCC GCCGATTGCA TGATTCCACC ACAATCAGAA
    ATTGTAGGTG AGAACAACGC ATCCAAGAGT GCTGCTAAAG AGCAGATTCT
    TTCTAGTACA AATGAGAAAA TGACTACTAG TGTTCCCCAG GGTGCTAGCT
    CCTCAAAATC ACCAAAGGGT GCACAGGAGA AGGCTAGTTT TTTGGGTAAA
    GGTGGAGAAC AACCTTTCTA CCAACCCAAT GTGTACGCAC CTCAGCCACA
    AACAATCTAT TCTGGAGGAT ACCTGAACCA TTTGGGCCAA TGGGAAGAAT
    ACCCCCATTA TGTCAATATG GAAGGACTCC ATTCTGTATC ACCTGGAATT
    TACAACGACA ACCAGTCAAT CATGTTATCT CCTGGATATG CAAACAACCC
    TCAAATGATG TATGGAGCTT ATTCTCCTGG CGTTGGAGAT GGCCAGCCAT
    ACCTCCCATT GCACTTTCCC TTCTCAAGTC CTTACTACCA GCCACCAGCC
    TCTCCTAGCA TGGGATACTC TAATTCCGCC ACTGGAATGT CTCAAGGAGA
    TCCTATGCTG CAGCAGGAGT ACTTCCTTCC TGACGGCCTT CTCTACTCGC
    CAACACCAGG TTATCATCAA CCATTCGGGT CTTTTGACAG AGCATCCACC
    CAACCAAGCA GCACTCCTGG TTTGTTTGGT CAAGGGAACA CACCGCTGGC
    TTTTGGAATG CATCATGGGT CAATGTATGC CCCTGGATCC TATAAGCCAC
    GCCAACAAGG TGGTAAGTTT GGAGGCACTA CTCCAAGTTG GAGTTCTGGT
    CGCAGATTTG GTACTTTTGA CTTAAGCGCC AATCAACAGA AAGGGAGCAT
    GCCATTTGGT ATTCAGAATG GTGCTCTTGA GTTCCTGAAT GAGCAAAACC
    GTGGGCCACG TGCTACAAAA CCAAAGAAAC AAGACACAGA GAACTCTTCA
    ATAGATGACA AAAATGAGAA AAATGTTCCT CTGGTTGATA GTGAACTGTA
    TAATCGCCCT GATTTTGTCA CTGAATACAA GGATGCAAAA TTTTTTGTAA
    TAAAGTCCTA CACTGAGGAC CATGTACATA GGAGCATTAA GTACAATGTT
    TGGGCCAGTA CAGCTAGTGG GAATAGAAAG CTGGATTCTG CTTATCGCTT
    GGCCAAAGAA AAAGAAGACT ATTGCCCTAT TTTTCTATTT TTCTCGGTTA
    ATGGCAGTGG TCAGTTCTGT GGTGTAGCTG AGATGATTGG ACCCGTCGAT
    TTTGACAAAA GTGTCGATTA TTGGCAGCAG GACAAGTGGA GTGGCCAGTT
    CCCTGTGAAG TGGCACATTA TTAAGGATGT CCCGAACAAC CTGCTGCGGC
    ACATCATTCT TGAGAACAAT GACAACAAAC CTGTAACTAA TAGCAGGGAC
    ACCCAGGAGG TGAAGCTGGA ACATGGTCTG CAGATGTTAA CTATCTTCAA
    GAACCATGAA TCGGAGACGA ACATTCTTGA AGACTTTGAC TTCTATGAGC
    AGCGGGAGAA AGCCTTGCAG GAGAATAGAC GTCAGCAGCA GCCTGCCAGC
    CCAGAGCTGC AGAAACCAGC AGAGAATAAG GCCCTAGGAG AACTTATGGC
    CCACATCTCA GACACATTTG GTCAGACTGT CCAGCTAAAA GAAACTGAGA
    ATGGCGAAAG CAAGCCTGCA GTTGAGGGTG TTTCTTCAGC TGATGAAGCG
    TCCACCGCAA CCACCAAGGC TGAAGATGGA ACGGCGAGCA CGAACGCTAG
    CCCTGTGGAG TAAAGCAGTC GATTTTCTCC CCCATATCAT TTACTAATTT
    GGAGCAGCAG TTGGATCATA TGATGCTCTT ATGGAGGTGA GAAGGGTTAA
    AAGAGCAGGT TGGTTATGTC AGGTGTTGCT GCTGCTTCAG TTGTACAACA
    TTATAGGCTT TGTTTCACCT CCCTTTAGGT TATAATTCCA ATTTCATAGT
    TCCGAAATTC TTGCTGTCAA TCTTCTTTCC TGTCTCAATG TGTTCCCTTT
    CGCTTTTACT TGTGTTGCGT CATGAATGCT GTTCAATGTG AGTGGTGGTG
    TTTAGCCATA AGAAGCTGCA TAATTATGCT GCCGGTAGCT TTCCAGTCTC
    ATGTCTCTCT GGTTCCATCC TTTGTATATT TGCAGAGCGC CATTCTTTTC
    TTGTGAACTT GGAGCTTCTT AAGCTCTCAT GTAGCACAAT TCTGTAGCAA
    AGCTCCTTTG GTCACGCGGT ACTTCATGAC TGAAATATTC AACTTGTGAT
    ACAAGGGGAA CCTAATTGGG AAGCATTCAG AACCG

    Gene models with high sequence identity

    1. AT3G13060.2 [+] show detail - evolutionarily conserved C-terminal region 5
      E-value: 3e-114; Score: 409.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan YTH domain 50.966
    HMMPfam YTH domain 7.2e-30
    HMMPanther YTH DOMAIN-CONTAINING 6.6e-106
    HMMPanther YTH domain 6.6e-106

    See the detailed result >

    AT3G13060.2

    Model type
    Protein coding
    Short Description
    evolutionarily conserved C-terminal region 5
    Computational Description
    evolutionarily conserved C-terminal region 5 (ECT5); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.4); Has 1288 Blast hits to 1234 proteins in 189 species: Archae - 0; Bacteria - 12; Metazoa - 605; Fungi - 140; Plants - 385; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR