K06740

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06740

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K06740

Determination of introduced cDNA(s)

  • J033063J05 - Rice Full-length cDNAs - Original: J033063J05

    full reading [+] show sequence

    Nucleotide sequence: J033063J05 - full reading 
    GGTCTCTGTC TCTCTTTCTT CTAGCTCTCT CTCTCTCTCT CTCTCTCTCA 
    TGGTCATCGC TTCCCTTTTA ACCTAAAGAA AGAGATCTTT CTTGGCATCT 
    CGATCGTCTT CGATCTCTCT CTAGCTAGCT ATACCTCACC GGCAATCCAA 
    GCTGCATGAT CTCTTGTAGA GCATACTACT AGTAGCTAGT TAATTAGTTG 
    CTGCATGTAT GCGTGCATGG AAGGGAGCCA GTTGGAGACG GCTTGCCTCC 
    CTGCCGCGCT CTACGCGCCG CTCTGCCCGT ACACGCCGCC TTCCCCTCCT 
    TCCTTTCTTG CGCCATTGCC GAGCCTGCAG CACAAGCTTC CCCAGCTGCC 
    GCAGCTGGTC CACGACCACG CCGCCGCCAC CGGGACGAAC CATGGCGTGA 
    TGTTCTCGTC GGACCATGGC TGCCTGTACC CGCTGCTCCC GGGGATCCCG 
    TTCTGCCTCG ACTCCGGCTG CGGCGCCGCC GCCTGCGACG ACGACAAGCC 
    CGCCGGTTTC GCGCACTTGG GCTCCGCCGA GGCGGACACA TCGGCGGCGG 
    CGGCGAGAGT GGATAGCGAG ATTGCTGCAG CTGCCACCGC AACCACTTGC 
    CATGGGCCTA ATTCATGGTG GAAGGGGACG GAGAAGGGGA AGATGAAGGT 
    GAGGAGGAAG ATGAGGGAGC CGAGGTTCTG CTTCCAGACC AGGAGCGATG 
    TGGATGTGCT GGACGACGGC TACAAGTGGA GGAAGTATGG CCAGAAGGTT 
    GTCAAGAACA GCCTCCACCC AAGGAGCTAC TACAGGTGCA CCCACAACAA 
    CTGCCGCGTG AAGAAGCGGG TGGAGCGGCT GTCGGAGGAT TGCCGCATGG 
    TGATCACCAC CTACGAGGGC CGCCACACCC ACACCCCCTG CAGCGACGAC 
    GCCACCACCG GCGCCGCCGG CGACCACACC GCCAGCTGCG CCTTCACCTC 
    CTTCTGACGA ACGCATGCTT ATGTACATGG ATCGGTGATG GATTATTGTT 
    CTCTGATCTG ATGGTGGCAA TTGGGAAATC GAAGAAGCAG GGATCGATGT 
    AAAATGAAAA TGTACTAGGA AAGCTTTTAG AACTCTTATG GATGCTATTT 
    AATTTCCTGG TCAATCAGCT AGCCGATCGA TCAACACGTT GCATGATATT 
    CAGTCTAATT ATGAATGAAA ATGTAGTAGG AAGCTTAATT

    Gene models with high sequence identity

    1. AT2G44745.1 [+] show detail - WRKY family transcription factor
      E-value: 5e-47; Score: 185.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan DNA-binding WRKY 28.897
    HMMSmart DNA-binding WRKY 1.3e-37
    Gene3D no description 2e-27
    HMMPfam DNA-binding WRKY 1.2e-29

    See the detailed result >

    AT2G44745.1

    Model type
    Protein coding
    Short Description
    WRKY family transcription factor
    Computational Description
    WRKY family transcription factor; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 13 (TAIR:AT4G39410.1); Has 3506 Blast hits to 3049 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3483; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR