K06740

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06740

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K06740

Determination of introduced cDNA(s)

  • J033063J05 - Rice Full-length cDNAs - Original: J033063J05

    full reading [+] show sequence

    Nucleotide sequence: J033063J05 - full reading
    GGTCTCTGTC TCTCTTTCTT CTAGCTCTCT CTCTCTCTCT CTCTCTCTCA 
    TGGTCATCGC TTCCCTTTTA ACCTAAAGAA AGAGATCTTT CTTGGCATCT
    CGATCGTCTT CGATCTCTCT CTAGCTAGCT ATACCTCACC GGCAATCCAA
    GCTGCATGAT CTCTTGTAGA GCATACTACT AGTAGCTAGT TAATTAGTTG
    CTGCATGTAT GCGTGCATGG AAGGGAGCCA GTTGGAGACG GCTTGCCTCC
    CTGCCGCGCT CTACGCGCCG CTCTGCCCGT ACACGCCGCC TTCCCCTCCT
    TCCTTTCTTG CGCCATTGCC GAGCCTGCAG CACAAGCTTC CCCAGCTGCC
    GCAGCTGGTC CACGACCACG CCGCCGCCAC CGGGACGAAC CATGGCGTGA
    TGTTCTCGTC GGACCATGGC TGCCTGTACC CGCTGCTCCC GGGGATCCCG
    TTCTGCCTCG ACTCCGGCTG CGGCGCCGCC GCCTGCGACG ACGACAAGCC
    CGCCGGTTTC GCGCACTTGG GCTCCGCCGA GGCGGACACA TCGGCGGCGG
    CGGCGAGAGT GGATAGCGAG ATTGCTGCAG CTGCCACCGC AACCACTTGC
    CATGGGCCTA ATTCATGGTG GAAGGGGACG GAGAAGGGGA AGATGAAGGT
    GAGGAGGAAG ATGAGGGAGC CGAGGTTCTG CTTCCAGACC AGGAGCGATG
    TGGATGTGCT GGACGACGGC TACAAGTGGA GGAAGTATGG CCAGAAGGTT
    GTCAAGAACA GCCTCCACCC AAGGAGCTAC TACAGGTGCA CCCACAACAA
    CTGCCGCGTG AAGAAGCGGG TGGAGCGGCT GTCGGAGGAT TGCCGCATGG
    TGATCACCAC CTACGAGGGC CGCCACACCC ACACCCCCTG CAGCGACGAC
    GCCACCACCG GCGCCGCCGG CGACCACACC GCCAGCTGCG CCTTCACCTC
    CTTCTGACGA ACGCATGCTT ATGTACATGG ATCGGTGATG GATTATTGTT
    CTCTGATCTG ATGGTGGCAA TTGGGAAATC GAAGAAGCAG GGATCGATGT
    AAAATGAAAA TGTACTAGGA AAGCTTTTAG AACTCTTATG GATGCTATTT
    AATTTCCTGG TCAATCAGCT AGCCGATCGA TCAACACGTT GCATGATATT
    CAGTCTAATT ATGAATGAAA ATGTAGTAGG AAGCTTAATT

    Gene models with high sequence identity

    1. AT2G44745.1 [+] show detail - WRKY family transcription factor
      E-value: 5e-47; Score: 185.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan DNA-binding WRKY 28.897
    HMMSmart DNA-binding WRKY 1.3e-37
    Gene3D no description 2e-27
    HMMPfam DNA-binding WRKY 1.2e-29

    See the detailed result >

    AT2G44745.1

    Model type
    Protein coding
    Short Description
    WRKY family transcription factor
    Computational Description
    WRKY family transcription factor; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 13 (TAIR:AT4G39410.1); Has 3506 Blast hits to 3049 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3483; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR