K06802

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06802

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06802

Determination of introduced cDNA(s)

  • J013145C05 - Rice Full-length cDNAs - Original: J013145C05

    full reading [+] show sequence

    Nucleotide sequence: J013145C05 - full reading 
    AGGGGAGGCC GGCAAGAAGC ATACTAGCAC GCTACGAAAC CCCCCTTCTC 
    TTCGTCCCCA AATTGCACTA CAAAAAAGGC CGCCCCTTTC TTCTCTCCTC 
    GTCCTTATCA CCACCAATCC GATCCTCTTC TCTTCTCTTC TCTTCTTCCC 
    CACATCCAGT TCGATTCTCA TCTCTCCCAC AACAAATCAC GCCATGGATC 
    CCTACAAGCA TCGGCCGTCC AGCGGGAGCA ATTCCACCTT CTGGACCACC 
    AACTCCGGCG CCCCCGTCTG GAACAACAAC TCCGCCCTCA CCGTCGGAGA 
    GCGAGGCCCT ATCCTCCTTG AGGACTATCA TCTGATTGAA AAGCTTGCAC 
    AGTTTGACAG GGAGCGTATC CCTGAACGTG TCGTTCATGC AAGGGGAGCC 
    AGTGCCAAGG GATTTTTTGA GGTTACTCAT GATATTTCTC ACCTCACATG 
    TGCTGATTTT CTCCGTGCTC CTGGTGTTCA GACCCCAGTT ATTGTTCGGT 
    TCTCCACAGT CGTGCATGAG CGTGGAAGCC CTGAGACATT GAGGGATCCA 
    CGTGGTTTTG CTGTCAAGTT TTACACTAGA GAGGGTAATT TTGATCTTGT 
    TGGGAACAAT ATGCCTGTCT TTTTTATCCG AGATGGGATG AAATTCCCTG 
    ACATGGTCCA TGCTTTCAAG CCAAGTCCAA AGACCAATAT GCAGGAGAAC 
    TGGAGAATAG TTGATTTCTT TTCACACCAC CCAGAGAGCC TGCACATGTT 
    CTCCTTCCTC TTTGACGATG TAGGCATCCC ACTCAACTAC AGGCACATGG 
    AGGGTTTTGG TGTCAACACC TACACCCTAA TCAATAAGGA TGGAAAGCCT 
    CACCTTGTCA AATTCCACTG GAAGCCTACC TGTGGTGTCA AATGCCTGTT 
    GGATGATGAA GCTGTGACTG TTGGCGGCAC CTGCCACAGC CATGCCACGA 
    AGGACTTGAC TGATTCTATT GCAGCAGGGA ATTACCCAGA GTGGAAGCTT 
    TACATCCAGA CTATTGATCC TGATCATGAG GACAGATTTG ACTTCGATCC 
    TCTTGATGTC ACCAAGACAT GGCCAGAGGA TATCATCCCC CTGCAGCCAG 
    TTGGACGGAT GGTCCTGAAC AAAAACATTG ATAACTTCTT TGCAGAAAAT 
    GAACAGCTTG CTTTCTGCCC AGCGATAATT GTCCCTGGAA TCCATTACTC 
    TGATGATAAG CTGCTCCAGA CAAGAATTTT CTCCTATGCT GATACCCAAA 
    GGCACCGTCT TGGCCCAAAC TATTTGATGC TTCCTGTGAA TGCACCAAAA 
    TGTGCATACC ACAACAACCA CCACGATGGC TCCATGAATT TCATGCACAG 
    GGATGAAGAG GTTAACTACT TCCCTTCAAG GTTTGATGCT GCACGTCATG 
    CTGAGAAGGT CCCTATTCCT CCTCGTGTTC TAACAGGCTG TCGGGAAAAG 
    TGTGTCATTG ACAAGGAGAA CAATTTCCAA CAGGCTGGTG AGAGATACCG 
    GTCATTTGAC CCTGCCAGGC AAGATCGTTT TCTCCAGCGG TGGGTTGATG 
    CTCTCTCAGA TCCTCGTATT ACACATGAAC TCCGTGGCAT CTGGATCTCC 
    TACTGGTCGC AGTGTGATGC GTCCCTTGGG CAGAAGCTGG CTTCACGTCT 
    CAACCTGAAA CCAAACATGT AGATCGGCCA GGAGGAATCC AGTGGTGGTG 
    CTATGTTGGA CAGTCAAACA TGAACTGTAA TGTGTCGACC AGCCGTAGTC 
    GTGAATAAAA TGTGATACGG TGATATGTAT ACTGGTGACG CAAGTTGTGA 
    AACTGTATCT GGAATCCTGA AAATATGCCT TGCTGTGTCT TGGGAAAGAG 
    ATAATAAAGA CTGATACAGT GGGTGCT

    Gene models with high sequence identity

    1. AT4G35090.1 [+] show detail - catalase 2
      E-value: 0; Score: 897.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Catalase related subgroup 1.1e-181
    HMMPfam Catalase-related immune responsive 1.7e-19
    Gene3D Catalase, N-terminal 1.7e-207
    FPrintScan Catalase related subgroup 1e-80
    FPrintScan Catalase related subgroup 1e-80
    FPrintScan Catalase related subgroup 1e-80
    FPrintScan Catalase related subgroup 1e-80
    FPrintScan Catalase related subgroup 1e-80
    FPrintScan Catalase related subgroup 1e-80
    ProfileScan Catalase, N-terminal 74.233
    PatternScan Catalase 0
    PatternScan Catalase 0
    superfamily Catalase-like domain, haem-dependent 4.5e-216
    HMMPanther Catalase-like domain, haem-dependent 1.9e-279

    See the detailed result >

    AT4G35090.1

    Model type
    Protein coding
    Short Description
    catalase 2
    Curator Summary
    Encodes a peroxisomal catalase, highly expressed in bolts and leaves. mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. Loss of function mutations have increased H2O2 levels and increased H2O2 sensitivity. Mutants accumulate more toxic ions yet show decreased sensitivity to Li+. This decreased sensitivity is most likely due to an insensitivity to ethylene. Note that in Queval et al. (2007) Plant Journal, 52(4):640, SALK_057998 is named as cat2-1, SALK_076998 is named as cat2-2; in Bueso et al. (2007) Plant Journal, 52(6):1052, SALK_076998 is named as cat2-1. TAIR has adopted the nomenclature consistent with that in Bueso et al. (2007) after consultation with the authors: SALK_076998 (cat2-1), SALK_057998 (cat2-2).
    Computational Description
    catalase 2 (CAT2); FUNCTIONS IN: protein binding, catalase activity, cobalt ion binding; INVOLVED IN: in 10 processes; LOCATED IN: mitochondrion, cytosolic ribosome, stromule, peroxisome, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Catalase (InterPro:IPR002226), Catalase related subgroup (InterPro:IPR018028), Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 1 (TAIR:AT1G20630.1); Has 6114 Blast hits to 6094 proteins in 1849 species: Archae - 22; Bacteria - 4292; Metazoa - 675; Fungi - 546; Plants - 461; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR