K06809

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	present in greater numbers in organism (PATO:0000470) (Cauline leaf::Number::many)
	rosette leaf (PO:0000014)	present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	stem (PO:0009047)	present in greater numbers in organism (PATO:0000470) (Stem::Number::many) abnormal (PATO:0000460) (Stem::Others)
	stem internode (PO:0020142)	decreased length (PATO:0000574) (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06809

Determination of introduced cDNA(s)

J013064A15 - Rice Full-length cDNAs - Original: J013064A15

full reading [+] show sequence

CTGGAGCGAG CGAGCGATTC ACGGTGGCCG CGGGCGACGG AGGCGAGGCG 
AGGAGGAGAT AGAGCAGCAG CAAGCCAGCC ATGGCGGCCT CCTCCACTGC 
TACCCGCCTC TCGCCGCCTC GCCTCCACGC ACCCACTACC CCTTCTCCCC 
ATCTCCCGCT TCGCCGCTCG CGCTTCTCCC CTCTTCGCGC CGCCAAGTTG 
GAAGCTGTGT TAACTATTGG AACTCATCTA ATACCACACC CAAGAAAGGC 
TGAGACTGGC GGAGAAGATG CTTTCTTTGT GAACGGCGAT GATGGTGGAG 
TGTTTGCCGT CGCAGATGGA GTTTCAGGAT GGGCAGAAAA GGATGTCAAT 
CCGGCTCTGT TTTCTCGAGA GCTCATGGCA CACACTTCTA CTTTTTCAAG 
GATGAGGAGG TCAATCATGA TCCTCAGCTT CTTCTAATGA AGGCTCATGC 
TGCAACAACT TCTGTTGGAT CTGCAACTGT AATCATTGCA ATGCTTGAGA 
AGACAGGGAT TCTAAAAATT GCAAGTGTGG GAGATTGTGG TTTGAAAGTA 
ATTAGAAAAG GCCAAGTAAT GTTCTCTACA TGTCCTCAAG AACATTACTT 
TGACTGCCCA TACCAGTTAA GCTCTGAAGC AATTGGTCAA ACGTATCTGG 
ATGCACTGGT TTGCACAGTA AATCTTATGG AGGGTGATAT GATTGTCAGT 
GGCTCAGATG GATTTTTTGA CAATATATTC GATCAAGAGA TCGTTTCTGT 
CATTTCCGAG TCTCCAGGGG TAGATGAAGC TGCAAAAGCA CTAGCAGAGC 
TTGCAAGGAA GCATTCAGTG GATGTCACCT TTGATTCACC CTACTCAATG 
GAGGCTCGGA GTCGGGGTTT TGATGTCCCC TCGTGGAAAA AGTTCATTGG 
AGGGAAACTA ATAGGTGGTA AGATGGATGA CATTACGGTT ATTGTTGCAC 
AGGTGAAGGC AGTGATGATC CCAGATGATG AGGGTGTTGA TGAAGAAAAG 
GGTCAAGGGG ATGAGCAAGG CAGTGCTGTT GCCGTTGCAT CCTCTGAACA 
GAAGGAAGAC TCAATTACCA CATAAACAGT AAAATCAATG ATACCGCAAT 
CACAATGTAA CTACTGATTC TTCAAAGCGA CGTTCTTCGT GCGCCGCCAT 
TTTCTATTTT ATGTCTTCCT CCTTATCTTT TCTCTAAGGA TGTACATTTG 
TAAGTTTCTA CTGGAGGGAA TACAACTCAA TCAAAATACT CATGTACAGC 
CGAATTCCCT GCAGAATTGA GTCGCTACGA ATACACCTCT CTTTCATTTA 
TTGCTGAAAA TTGTGACTTT CCTTTTATAC AAGTCACCCA TTTACATATG 
CATTCTATCT C

Gene models with high sequence identity

AT2G30170.1 [+] show detail - Protein phosphatase 2C family protein
E-value: 4e-67; Score: 59.30

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Sporulation stage II, protein E C-terminal	0.000074
HMMPanther	PROTEIN PHOSPHATASE 2C	8.3e-37
HMMPanther	PROTEIN PHOSPHATASE 2C	0.0000000000053
HMMSmart	Protein phosphatase 2C-related	0.0015
Gene3D	Protein phosphatase 2C-related	0.00000019
superfamily	Protein phosphatase 2C-related	6.3e-19

See the detailed result >

AT2G30170.1

Model type: Protein coding
Short Description: Protein phosphatase 2C family protein
Computational Description: Protein phosphatase 2C family protein; FUNCTIONS IN: phosphoprotein phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Sporulation stage II, protein E C-terminal (InterPro:IPR010822); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G16580.1); Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR