K06809

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06809

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • present in greater numbers in organism (PATO:0000470)
    (Cauline leaf::Number::many)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06809

Determination of introduced cDNA(s)

  • J013064A15 - Rice Full-length cDNAs - Original: J013064A15

    full reading [+] show sequence

    Nucleotide sequence: J013064A15 - full reading
    CTGGAGCGAG CGAGCGATTC ACGGTGGCCG CGGGCGACGG AGGCGAGGCG 
    AGGAGGAGAT AGAGCAGCAG CAAGCCAGCC ATGGCGGCCT CCTCCACTGC
    TACCCGCCTC TCGCCGCCTC GCCTCCACGC ACCCACTACC CCTTCTCCCC
    ATCTCCCGCT TCGCCGCTCG CGCTTCTCCC CTCTTCGCGC CGCCAAGTTG
    GAAGCTGTGT TAACTATTGG AACTCATCTA ATACCACACC CAAGAAAGGC
    TGAGACTGGC GGAGAAGATG CTTTCTTTGT GAACGGCGAT GATGGTGGAG
    TGTTTGCCGT CGCAGATGGA GTTTCAGGAT GGGCAGAAAA GGATGTCAAT
    CCGGCTCTGT TTTCTCGAGA GCTCATGGCA CACACTTCTA CTTTTTCAAG
    GATGAGGAGG TCAATCATGA TCCTCAGCTT CTTCTAATGA AGGCTCATGC
    TGCAACAACT TCTGTTGGAT CTGCAACTGT AATCATTGCA ATGCTTGAGA
    AGACAGGGAT TCTAAAAATT GCAAGTGTGG GAGATTGTGG TTTGAAAGTA
    ATTAGAAAAG GCCAAGTAAT GTTCTCTACA TGTCCTCAAG AACATTACTT
    TGACTGCCCA TACCAGTTAA GCTCTGAAGC AATTGGTCAA ACGTATCTGG
    ATGCACTGGT TTGCACAGTA AATCTTATGG AGGGTGATAT GATTGTCAGT
    GGCTCAGATG GATTTTTTGA CAATATATTC GATCAAGAGA TCGTTTCTGT
    CATTTCCGAG TCTCCAGGGG TAGATGAAGC TGCAAAAGCA CTAGCAGAGC
    TTGCAAGGAA GCATTCAGTG GATGTCACCT TTGATTCACC CTACTCAATG
    GAGGCTCGGA GTCGGGGTTT TGATGTCCCC TCGTGGAAAA AGTTCATTGG
    AGGGAAACTA ATAGGTGGTA AGATGGATGA CATTACGGTT ATTGTTGCAC
    AGGTGAAGGC AGTGATGATC CCAGATGATG AGGGTGTTGA TGAAGAAAAG
    GGTCAAGGGG ATGAGCAAGG CAGTGCTGTT GCCGTTGCAT CCTCTGAACA
    GAAGGAAGAC TCAATTACCA CATAAACAGT AAAATCAATG ATACCGCAAT
    CACAATGTAA CTACTGATTC TTCAAAGCGA CGTTCTTCGT GCGCCGCCAT
    TTTCTATTTT ATGTCTTCCT CCTTATCTTT TCTCTAAGGA TGTACATTTG
    TAAGTTTCTA CTGGAGGGAA TACAACTCAA TCAAAATACT CATGTACAGC
    CGAATTCCCT GCAGAATTGA GTCGCTACGA ATACACCTCT CTTTCATTTA
    TTGCTGAAAA TTGTGACTTT CCTTTTATAC AAGTCACCCA TTTACATATG
    CATTCTATCT C

    Gene models with high sequence identity

    1. AT2G30170.1 [+] show detail - Protein phosphatase 2C family protein
      E-value: 4e-67; Score: 59.30

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Sporulation stage II, protein E C-terminal 7.4e-05
    HMMPanther PROTEIN PHOSPHATASE 2C 8.3e-37
    HMMPanther PROTEIN PHOSPHATASE 2C 5.3e-12
    HMMSmart Protein phosphatase 2C-related 0.0015
    Gene3D Protein phosphatase 2C-related 1.9e-07
    superfamily Protein phosphatase 2C-related 6.3e-19

    See the detailed result >

    AT2G30170.1

    Model type
    Protein coding
    Short Description
    Protein phosphatase 2C family protein
    Computational Description
    Protein phosphatase 2C family protein; FUNCTIONS IN: phosphoprotein phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Sporulation stage II, protein E C-terminal (InterPro:IPR010822); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G16580.1); Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR