K06811

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06811

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06811

Determination of introduced cDNA(s)

J023056J07 - Rice Full-length cDNAs - Original: J023056J07

full reading [+] show sequence

GATTCCGATC GCCACCCCGC GGTTCTGCTC TCGCCGGCCG AACAACGCGT 
GCTCACGCTC GCCGCCGCCG GTCGCCGCCT CCAAATCGTC GCCAGAGAAT 
CCGCGTCCTC CCCAGATGAC GCTGCGCACG GGAGAAGCAA CGCCGCCTCC 
CCAGGCGCAT GCCGAGGAGG AGCCGGGGCG GGGGAAGCGC CGGCGCGTCG 
TCGCCCGTGA GACGAGGCTG CAGCAGGAGG AGGAGGAGGA GGAGGGCGCC 
TCATCCGAGC CGGAGACCAG ACCGCGCCCT CCCCCCGCCA CCCCCGCCAC 
TGCAGAGGAG CCCGCCGCCA CCGCCGCTGG GGCGGAGGCC AGGGCTCAGC 
TGGCCATAAA CATTCGCCGT ATGCTTGCTG TCGAGGCAGA GAGAAGGGGC 
CGAATCGCTG AACGAATTGG AGTTCAGGCT GAGGGTCCAA TTCTCACTCT 
GGAGGATACA TTTTGTGATA TTGATGATGG TAGTGCTAAA AGCCAAGTTG 
CTCGAAAGGT TGCTTTGGGT GTTTCACAGT CAATTGTCAG TTTATCTTCC 
TTTGCAGGTC GAAAAAGGAT ACGGGTTTGC TCAGGATTTG TGATACGGTG 
GAACGATAGT ACCAGCATTG GTACAATATT AACCTCAGCA GCACTTGTTA 
GACCTCCATG CGGAGATGAT GTCAGGGTGG AGGTCTTTCT ACCTAGTGGG 
GATATATCTA TTTGCCAGAT TTCCATGGTA GATTTCCATC ATAACATAGC 
CTTAGTTGAA GTCACATCCA ATTTCAAGCT TCAAGAGGCT GTTATCCTTA 
AATATATTAT CGACAAGGGA GATGTTTTAG CCCTTGGCCG TTCTTATGAA 
GGTGGGCTTC TGATGTGCTC AAGGGGAGAA ATAAGCAACA GAGCCAGCAT 
ATTTGAGTGT TCAGAACTGT TAGTATCAAG TTGCGAGATA ACAATGGCTG 
GCACCGGGGG ACCCCTTGTA AATTATAATG GCCATGTTGT AGGTATTAAC 
TTCTTTGAAG AGAACCAAAC GCCATTTCTT TCGATGGCAA TTGTTTTCAA 
ATGCTTGGAA CATCACCAGA TATTTGGAAG AATAATTCGA CCTTGGATTG 
GATTCTGGTT CACCTCTATT CAAATGGTTC CGCTTAGTCA TCTAGAGCAC 
ATATACAGAA AATTCTCGGA TGTTGATAAT GGCCTATATA TTTCAAATGT 
GGCTGAGGGA TCACCCGCTG ATATTGCTGG AATATGTCAG GGTGATATTC 
TCATGAAATG TGGTGGGAAA TTCCTCTCTA CTGCCCCTGA GTTCGGTGCA 
ATGTTGATGG ATAAATGCAA GGAAACTATG GAAGAGTATG ACCAAGAAAC 
CAATGGTGAT TTTTCAGCGA AAAGGATAAC AGTTGAGATT GTTATAAAGC 
GAGAAAATGA TGGAAGCACT ATAGAGAAAA CTATATCTGC TGGTTTGATA 
GAAGAGTTTA ACTATAACAG GTGGCCTACA CCGATCCCTA GCTATAAGGT 
CAGACGAGAT ACTATTGGAA GGTGTTAAGA GCCTTAGAGG TGCAGTTCAT 
CTACGTGCAT GCATGTTATA ATTAGGTCTG ACCCACACAA TTTGTCCGGC 
CCGGTGACCT GTGTTACATC CCTCTGCATT TTGCACATCC CGTTCCAAAA 
AAAAAAAAAC ACGACATCAT ACAACAGCGG GTCGCCCAAA TTATTGATGA 
CCGACGTCAT CGCTGAAACA AGGAAGTTCC ATGGCGCCAC CGCTAATTAT 
TGACCTCTCC ATTACTTGAA CTGCTGTTGA TCTTTATAGG TGACTTGAAC 
CGCTGCTGGT GTTGTTTATC TGATCTTGCT CAGTTCTGTT TCAGGATGTG 
GCCAGGTTGT GGTCTTGTGT GATGTCTGTG TGGCTCGTGA TCTGTATTGC 
AAAAGTTTGT GGCTGCTAAA TCCTGGGTGA TGCAGCCAAG TTTTGGCGGC 
ATGATACTTG TGTTGTGCTT GTGCGTCTGT GATCGATCAT TTCCCAAATT 
TCATAGATTA CTTTCAAATA CATGTCTGTG CTCTGCTCTC TTCGCAGAGA 
AAAAGGGATG ATTCCCAAGT TTGTAGAGTA CTAAGGCTGT GTTTAGATAT 
AAAGTTTGGA TCCAAACTTC

Gene models with high sequence identity

AT5G27660.1 [+] show detail - Trypsin family protein with PDZ domain
E-value: 4e-21; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	SERINE PROTEASE FAMILY S1C HTRA-RELATED	3.2e-13
Gene3D	no description	3.2e-09
superfamily	Serine/cysteine peptidase, trypsin-like	2.2e-22
superfamily	PDZ/DHR/GLGF	7.6e-15

See the detailed result >

AT5G27660.1

Model type: Protein coding
Short Description: Trypsin family protein with PDZ domain
Computational Description: Trypsin family protein with PDZ domain; FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 16463 Blast hits to 16423 proteins in 2614 species: Archae - 115; Bacteria - 10782; Metazoa - 377; Fungi - 151; Plants - 529; Viruses - 0; Other Eukaryotes - 4509 (source: NCBI BLink).
Link: InterPro Scan - TAIR