K06811

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06811

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06811

Determination of introduced cDNA(s)

  • J023056J07 - Rice Full-length cDNAs - Original: J023056J07

    full reading [+] show sequence

    Nucleotide sequence: J023056J07 - full reading
    GATTCCGATC GCCACCCCGC GGTTCTGCTC TCGCCGGCCG AACAACGCGT 
    GCTCACGCTC GCCGCCGCCG GTCGCCGCCT CCAAATCGTC GCCAGAGAAT
    CCGCGTCCTC CCCAGATGAC GCTGCGCACG GGAGAAGCAA CGCCGCCTCC
    CCAGGCGCAT GCCGAGGAGG AGCCGGGGCG GGGGAAGCGC CGGCGCGTCG
    TCGCCCGTGA GACGAGGCTG CAGCAGGAGG AGGAGGAGGA GGAGGGCGCC
    TCATCCGAGC CGGAGACCAG ACCGCGCCCT CCCCCCGCCA CCCCCGCCAC
    TGCAGAGGAG CCCGCCGCCA CCGCCGCTGG GGCGGAGGCC AGGGCTCAGC
    TGGCCATAAA CATTCGCCGT ATGCTTGCTG TCGAGGCAGA GAGAAGGGGC
    CGAATCGCTG AACGAATTGG AGTTCAGGCT GAGGGTCCAA TTCTCACTCT
    GGAGGATACA TTTTGTGATA TTGATGATGG TAGTGCTAAA AGCCAAGTTG
    CTCGAAAGGT TGCTTTGGGT GTTTCACAGT CAATTGTCAG TTTATCTTCC
    TTTGCAGGTC GAAAAAGGAT ACGGGTTTGC TCAGGATTTG TGATACGGTG
    GAACGATAGT ACCAGCATTG GTACAATATT AACCTCAGCA GCACTTGTTA
    GACCTCCATG CGGAGATGAT GTCAGGGTGG AGGTCTTTCT ACCTAGTGGG
    GATATATCTA TTTGCCAGAT TTCCATGGTA GATTTCCATC ATAACATAGC
    CTTAGTTGAA GTCACATCCA ATTTCAAGCT TCAAGAGGCT GTTATCCTTA
    AATATATTAT CGACAAGGGA GATGTTTTAG CCCTTGGCCG TTCTTATGAA
    GGTGGGCTTC TGATGTGCTC AAGGGGAGAA ATAAGCAACA GAGCCAGCAT
    ATTTGAGTGT TCAGAACTGT TAGTATCAAG TTGCGAGATA ACAATGGCTG
    GCACCGGGGG ACCCCTTGTA AATTATAATG GCCATGTTGT AGGTATTAAC
    TTCTTTGAAG AGAACCAAAC GCCATTTCTT TCGATGGCAA TTGTTTTCAA
    ATGCTTGGAA CATCACCAGA TATTTGGAAG AATAATTCGA CCTTGGATTG
    GATTCTGGTT CACCTCTATT CAAATGGTTC CGCTTAGTCA TCTAGAGCAC
    ATATACAGAA AATTCTCGGA TGTTGATAAT GGCCTATATA TTTCAAATGT
    GGCTGAGGGA TCACCCGCTG ATATTGCTGG AATATGTCAG GGTGATATTC
    TCATGAAATG TGGTGGGAAA TTCCTCTCTA CTGCCCCTGA GTTCGGTGCA
    ATGTTGATGG ATAAATGCAA GGAAACTATG GAAGAGTATG ACCAAGAAAC
    CAATGGTGAT TTTTCAGCGA AAAGGATAAC AGTTGAGATT GTTATAAAGC
    GAGAAAATGA TGGAAGCACT ATAGAGAAAA CTATATCTGC TGGTTTGATA
    GAAGAGTTTA ACTATAACAG GTGGCCTACA CCGATCCCTA GCTATAAGGT
    CAGACGAGAT ACTATTGGAA GGTGTTAAGA GCCTTAGAGG TGCAGTTCAT
    CTACGTGCAT GCATGTTATA ATTAGGTCTG ACCCACACAA TTTGTCCGGC
    CCGGTGACCT GTGTTACATC CCTCTGCATT TTGCACATCC CGTTCCAAAA
    AAAAAAAAAC ACGACATCAT ACAACAGCGG GTCGCCCAAA TTATTGATGA
    CCGACGTCAT CGCTGAAACA AGGAAGTTCC ATGGCGCCAC CGCTAATTAT
    TGACCTCTCC ATTACTTGAA CTGCTGTTGA TCTTTATAGG TGACTTGAAC
    CGCTGCTGGT GTTGTTTATC TGATCTTGCT CAGTTCTGTT TCAGGATGTG
    GCCAGGTTGT GGTCTTGTGT GATGTCTGTG TGGCTCGTGA TCTGTATTGC
    AAAAGTTTGT GGCTGCTAAA TCCTGGGTGA TGCAGCCAAG TTTTGGCGGC
    ATGATACTTG TGTTGTGCTT GTGCGTCTGT GATCGATCAT TTCCCAAATT
    TCATAGATTA CTTTCAAATA CATGTCTGTG CTCTGCTCTC TTCGCAGAGA
    AAAAGGGATG ATTCCCAAGT TTGTAGAGTA CTAAGGCTGT GTTTAGATAT
    AAAGTTTGGA TCCAAACTTC

    Gene models with high sequence identity

    1. AT5G27660.1 [+] show detail - Trypsin family protein with PDZ domain
      E-value: 4e-21; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SERINE PROTEASE FAMILY S1C HTRA-RELATED 3.2e-13
    Gene3D no description 3.2e-09
    superfamily Serine/cysteine peptidase, trypsin-like 2.2e-22
    superfamily PDZ/DHR/GLGF 7.6e-15

    See the detailed result >

    AT5G27660.1

    Model type
    Protein coding
    Short Description
    Trypsin family protein with PDZ domain
    Computational Description
    Trypsin family protein with PDZ domain; FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 16463 Blast hits to 16423 proteins in 2614 species: Archae - 115; Bacteria - 10782; Metazoa - 377; Fungi - 151; Plants - 529; Viruses - 0; Other Eukaryotes - 4509 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR