K06812

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06812

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06812

Determination of introduced cDNA(s)

  • J033035L13 - Rice Full-length cDNAs - Original: J033035L13

    full reading [+] show sequence

    Nucleotide sequence: J033035L13 - full reading 
    GAGCTGAGTA GGCTAGTTTC TTCTCGTCGG CGAAGGCATC GTTCGGATTT 
    CACGGCGAGG TCGCCATGGG ATGCGCGTCG TCGAAGCAGT TCAAGCGGCC 
    GCCGGGGTAC GAGGAGCCGG CCGTCCTCGC CGCCCAAACC ACCTTTACGG 
    TGAACGAGGT GGAGGCGCTG CGCGAGCTGT ACAACAAGAT GAGCTATTCC 
    ATCATCAAGG ACGGCCTCAT CCACAAGGAG GAGTTTCAGC TTGCCTTGTT 
    CAGGAACAGC AGAAAGGCGA ATCTCTTCGC AGACAGGGTG TTTGATTTGT 
    TTGATCTGAA GAGAAATGGG GTAATCGAAT TTGGGGAGTT TGTACGGTCG 
    CTCAGTGTGT TCCACCCAAA AGCGCCTAAA TCAGAGAAGA CTGCGTTTGC 
    ATTCAAGCTC TATGATCTAA GAGGGACAGG ATATATTGAG AAAGAAGAGC 
    TCAGGGAGAT GGTCTTGGCA CTTCTAGATG AATCAGACCT ACATCTTTCC 
    GAATGCGCTG TCGAGGCAAT TGTCGATAAT ACATTCAGTC AAGCAGACTC 
    AAATGGAGAT GGCAGGATAG ACCCTGAGGA ATGGGAAGAA TTTGTTAAGG 
    CGAACCCGGC ATCACTAAGG AACATGTCAC TTCCCTATTT GCAGGACATT 
    ACCATGGCGT TCCCGAGCTT TGTAATGCAT TCAGAAGCCC ATGACTGAAA 
    ATACAGATCC CATTGGAACG TATTACAAGC AACCAAAAGT TCTCCATTGT 
    TGCTGAAGCT CGAGGCAGCT CAATTTGTTG GATGCGCCGG AGTTCAGAAG 
    CAGGCTGCAA CTGAAATGCG TTGACCGTCA TCGCATGAGT GAATGACGCC 
    ATGAACAACA GAATGGCATC TGATAATAAG TATCAGAGTG GCTTTTCTTC 
    TGCTTATGCG AGGGATACAG AGGGCCCAGC AGCAAGATTG TTCAACGAAG 
    CAACACAAGC AAAATTAAGC ACTCTGACCT GCTGAAATGC CTTCTTTTTT 
    TCCCGTCTTG TATGTATAGT TGTGAGTCAG AAGTGACACT GGTGACCATT 
    GACCTATAGT TGAAGAGATG CAGGAGTGTT CATTTTTCTT CT

    Gene models with high sequence identity

    1. AT5G24270.2 [+] show detail - Calcium-binding EF-hand family protein
      E-value: 5e-75; Score: 278.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan EF-HAND 2 10.72
    ProfileScan EF-HAND 2 11.752
    ProfileScan EF-HAND 2 12.672
    superfamily EF-hand 6.4e-46
    Gene3D EF-hand-like domain 1.1e-51
    PatternScan EF-Hand 1, calcium-binding site 0
    FPrintScan Recoverin 1.1e-08
    FPrintScan Recoverin 1.1e-08
    FPrintScan Recoverin 1.1e-08
    HMMPanther Calcineurin B protein 5.4e-116
    HMMPanther CALCINEURIN B 5.4e-116
    HMMSmart Calcium-binding EF-hand 8.3
    HMMSmart Calcium-binding EF-hand 1.5
    HMMSmart Calcium-binding EF-hand 0.0078

    See the detailed result >

    AT5G24270.2

    Model type
    Protein coding
    Short Description
    Calcium-binding EF-hand family protein
    Curator Summary
    encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B. Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.
    Computational Description
    SALT OVERLY SENSITIVE 3 (SOS3); CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcineurin B-like protein 8 (TAIR:AT1G64480.1).
    Link
    InterPro Scan - TAIR