K06818

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06818

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06818

Determination of introduced cDNA(s)

  • J033074A14 - Rice Full-length cDNAs - Original: J033074A14

    full reading [+] show sequence

    Nucleotide sequence: J033074A14 - full reading 
    GAAGGCAAGC GAGTTGGGAG GAGGACCAGC GAGCAACCAG CCCCCCGCCC 
    CCAATGGCGG CAGCAGCAGC TTTGCCCACC GCTGCCGCTT TTGCCCACCT 
    CTCCTCCGAT TAATCCCCTC CCCTCCTCTT CCTCCCACTT CTCCGCCTCC 
    TCTTCCTCCC CTCGCCGACC CTACCTACTC GCGCCGCCGC CGTCGCATTG 
    GGCGGCAAAC GGAGGGGGGG TTAACCCTGA TGGAGCAGTA CGAGAAGGAG 
    GAGAAGATTG GGGAGGGCAC GTACGGGGTG GTGTACAGGG CGCGGGACAA 
    GGTCACCAAC GAGACGATCG CGCTCAAGAA GATCCGGCTT GAGCAGGAGG 
    ATGAGGGCGT CCCCTCCACC GCAATCCGCG AGATCTCGCT CCTCAAGGAG 
    ATGCATCACG GCAACATCGT CAGGTTACAC GATGTTATCC ACAGTGAGAA 
    GCGCATATAT CTTGTCTTTG AGTATCTGGA TCTGGACCTA AAGAAGTTCA 
    TGGACTCTTG TCCAGAGTTT GCGAAAAACC CCACTTTAAT TAAGACTTTG 
    GTTTAGCCAG GGCATTTGGA ATTCCTGTCC GCACGTTTAC TCACGAGGTT 
    GTAACCTTGT GGTATAGAGC TCCAGAGATC CTTCTTGGAT CAAGGCAGTA 
    TTCTACACCA GTTGATATGT GGTCAGTTGG TTGTATCTTT GCAGAAATGG 
    TGAACCAGAA ACCACTGTTC CCTGGTGATT CTGAGATTGA TGAATTATTT 
    AAGATATTCA GGGTACTAGG AACTCCAAAT GAACAAAGTT GGCCAGGAGT 
    TAGCTCATTA CCTGACTACA AGTCTGCTTT CCCCAAGTGG CAAGCACAGG 
    ATCTTGCAAC TATTGTCCCT ACTCTTGACC CTGCTGGTTT GGACCTTCTC 
    TCTAAAATGC TTCGGTACGA GCCAAACAAA AGGATCACAG CTAGACAGGC 
    TCTTGAGCAT GAATACTTCA AGGACCTTGA GATGGTACAA TGACCCTGCT 
    ATGGCTTTAC ATTGGATTGG CATATGTATG GGCTGGGCTC CTCATTTCAT 
    TCCTTCTGTG AACGCTGTGC CCTTCGTTTG GGCATTTTTG TCATTCAGCT 
    GGATATTTCA AATCTTGTGT GTTTGATATG TATTCAGGAA CGCTAAATAG 
    ATCACCATCT TGGTCTCTAT TTGTTCAGAG TAAATATCTT CCAATGCTGC 
    CTTTCAGTTT CC

    Gene models with high sequence identity

    1. AT3G48750.1 [+] show detail - cell division control 2
      E-value: 9e-115; Score: 180.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CELL DIVISION CONTROL PROTEIN 2 (P34 PROTEIN 6.4e-66
    HMMPanther CDC2, MAP KINASE-RELATED 6.4e-66
    HMMPanther CELL DIVISION CONTROL PROTEIN 2 (P34 PROTEIN 1.5e-63
    HMMPanther CDC2, MAP KINASE-RELATED 1.5e-63
    HMMPfam Serine/threonine-protein kinase-like domain 2e-31
    HMMPfam Serine/threonine-protein kinase-like domain 3.2e-21
    ProfileScan Protein kinase, catalytic domain 21.178
    ProfileScan Protein kinase, catalytic domain 16.853
    PatternScan Protein kinase, ATP binding site 0
    HMMSmart Serine/threonine-protein kinase domain 0.00000071
    HMMSmart Serine/threonine-protein kinase domain 0.000053
    superfamily Protein kinase-like domain 8.6e-38
    superfamily Protein kinase-like domain 1.4e-27
    Gene3D no description 5e-42
    Gene3D no description 1.5e-29

    See the detailed result >

    AT3G48750.1

    Model type
    Protein coding
    Short Description
    cell division control 2
    Curator Summary
    A-type cyclin-dependent kinase. Together with its specific inhibitor, the Kip-related protein, KRP2 they regulate the mitosis-to-endocycle transition during leaf development. Dominant negative mutations abolish cell division. Loss of function phenotype has reduced fertility with failure to transmit via pollen. Pollen development is arrested at the second mitotic division. Expression is regulated by environmental and chemical signals. Part of the promoter is responsible for expression in trichomes. Functions as a positive regulator of cell proliferation during development of the male gametophyte, embryo and endosperm. Phosphorylation of threonine 161 is required for activation of its associated kinase.
    Computational Description
    cell division control 2 (CDC2); FUNCTIONS IN: protein binding, protein kinase activity, cyclin-dependent protein kinase activity, kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase B1;2 (TAIR:AT2G38620.2); Has 126125 Blast hits to 124135 proteins in 4221 species: Archae - 112; Bacteria - 14002; Metazoa - 46757; Fungi - 13170; Plants - 30525; Viruses - 484; Other Eukaryotes - 21075 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR