K06822

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06822

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06822

Determination of introduced cDNA(s)

  • J033102D01 - Rice Full-length cDNAs - Original: J033102D01

    full reading [+] show sequence

    Nucleotide sequence: J033102D01 - full reading 
    GTCCGGTCGT CGCAAGCCCG CATCAACGAG CAGGAGGGAT ATAAAACCCT 
    CCGCCCCCTC CTCCCCCAAA CCCTTCCGCC GCCGCCGTCG CCGTCGCCTG 
    CTCCAGCGCG CTCGCCGCCG GCCGCCCTAC TCCCGCTCCA GGCCCGTCAC 
    CGCCGTCGCC GATCCAACAT GGGTAAGACA CGTGGTATGG GAGCTGGGCG 
    CAAGCTCAAG ACCCACAGGA GAAACCAGAG GTGGGCCGAC AAAGCATACA 
    AGAAGAGCCA TCTTGGCAAT GAATGGAAGA AACCCTTTGC TGGTTCATCT 
    CATGCAAAGG GCATTGTCCT TGAAAAGATT GGCATTGAAG CTAAGCAGCC 
    AAACTCTGCT ATCCGTAAGT GTGCTCGTGT TCAGTTGGTG AAGAATGGGA 
    AGAAGATAGC TGCCTTTGTG CCGAACGATG GTTGCTTGAA CTTCATCGAG 
    GAAAATGACG AGGTGCTCAT CGCTGGGTTT GGTCGTAAGG GACATGCTGT 
    GGGAGACATT CCCGGTGTCC GTTTCAAGGT GGTGAAGGTC TCCGGCGTCT 
    CTCTCCTCGC CCTCTTCAAG GAGAAGAAGG AGAAGCCAAG ATCTTAAATC 
    CTATTCCCCT CCATTGCAAG CAGCTGGAGC GGCATGGCGG CTATAAGAAG 
    TACAATTAGC TACATTCAGC TAATGAATTC TGGGGCCTTC CTTTTCTGCT 
    TCTGGCAGCT AATCTCTCTC TGAAATTCAG ACTCGATGTT GTGGTGAACA 
    TGTCAATCGT ATTTTTACCC CCCCTAATCA CCTGAATTCA AATTCCATAT 
    AGAAGTAGCA GCGGATTTGG TTTCCTTCAG CGCGATTTTA AAATTCAAAC 
    CTGGAATGTC GTGGAGTGAA GTAGTGTCAT CATATGCTTG TGAATCTCTG 
    CAAGTTGCAA GCAGCCTATT TTGTTGTTTT CTTGTGGCGC GGTTTGAATC 
    TTGAATGAAG TCATCATTTT G

    Gene models with high sequence identity

    1. AT5G02960.1 [+] show detail - Ribosomal protein S12/S23 family protein
      E-value: 2e-74; Score: 276.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Nucleic acid-binding, OB-fold 6e-22
    HMMPanther 40S RIBOSOMAL PROTEIN S23 1.8e-55
    HMMPanther Ribosomal protein S12/S23 1.8e-55
    HMMPfam Ribosomal protein S12/S23 1.4e-40
    superfamily Nucleic acid-binding, OB-fold-like 9.7e-33
    PatternScan Ribosomal protein S12/S23 0
    HMMTigr Ribosomal protein S23, eukaryotic/archaeal 1.7e-59

    See the detailed result >

    AT5G02960.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S12/S23 family protein
    Computational Description
    Ribosomal protein S12/S23 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S23, eukaryotic/archaeal (InterPro:IPR005680), Ribosomal protein S12/S23 (InterPro:IPR006032), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Ribosomal protein S12/S23 family protein (TAIR:AT3G09680.1); Has 9074 Blast hits to 9071 proteins in 3107 species: Archae - 259; Bacteria - 5125; Metazoa - 487; Fungi - 294; Plants - 977; Viruses - 0; Other Eukaryotes - 1932 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR