K06825

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06825

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06825

Determination of introduced cDNA(s)

  • J023006J10 - Rice Full-length cDNAs - Original: J023006J10

    full reading [+] show sequence

    Nucleotide sequence: J023006J10 - full reading 
    GATACTACGT CTACGCCACA GGCCCACACA GCGAGCACTC GCGCTCGCTC 
    CTCCTCTTCT TCTTCTTCTC TAGCTAGTTA GCCGGCGGGC GCCGCGCGCA 
    CACCGTGCAG CACCGGCACT CCGGTCTCCG GCGGTCACAG TGCGGCAGAG 
    CAGTTAACCA TGGGCCACCG CCTCGTCGTT GTGCTTCTGC TGGCCTTATT 
    AGTAGCTGGA GCCGCGCGCG CGGCGGAGCA AGCTGCGGGC GAAGACGGCA 
    TTCGCGGCGG CGCCGGCGCC GATCATCAGG AGGCGGCCGG GATCACGGGC 
    GGGCTGAGCC GGCGGAGCTT CCCGGCGGGG TTCGTGTTCG GGACGGCGGC 
    GTCGGCGTAC CAGGTGGAGG GCATGGCGCT CAAGGATGGC CGCGGCCCTA 
    GCATTTGGGA CGCCTTCGTC AAGACTCCCG GTGAAATAGC AAATAATGCT 
    ACGGCAGATG TTACTGTTGA TGAGTACCAT CGCTACAAGG AGGACGTAAA 
    CATCATGAAA AGTATGGGTT TCGATGCGTA CCGCTTCTCA ATCTCATGGT 
    CAAGAATATT CCCAACTGGA ACTGGGAAAG TAAATTGGAA AGGTGTGGCA 
    TACTATAACA GATTGATAAA CTATATGCTG AAGATAGGCA TTACACCTTA 
    TGCCAATTTG TATCACTATG ACTTACCAGA GGCACTAGAG GTGCAATATG 
    GAGGACTGTT GAACAGAAAA ATAGTGGAAG CATTCGCAGA CTACGCTGAG 
    TTTTGCTTCA AGACATTTGG CGACAGAGTG GAGAACTGGA TGACATTTAA 
    CGAACCGAGA GTTGTTGCCG CTCTAGGATA CGATGATGGA AATTTTGCTC 
    CAGGAAGGTG CACAAAATGC ACGGCTGGAA ACTCTGCCAC CGAGCCTTAC 
    ATTGTTGCCC ATCACCTCAT TCTTTCCCAT GCTTCTGCTG TTCAGAGATA 
    CCGGCACAAG TATCAGCATA TACAAAAGGG GAAGATTGGA ATTCTTCTGG 
    ATTTTGTCTG GTATGAAGGT CTTACCAATT CAACGGCAGA CCAAGCTGCG 
    GCTCAAAGAT CAAGAGACTT CCACGTTGGA TGGTTTCTTC ACCCAATCAT 
    CTATGGTGAA TACCCTAAAT CGCTGCAAGT GATTGTCAAA GAACGGCTTC 
    CGAAGTTCAC GGCCGATGAG GTCCACATGG TGAAGGGATC AATCGACTAT 
    GTTGGCATTA ATCAGTATAC TGCTTATTAT GTCCGTGATC AGCAGCCGAA 
    CGCCACGACT CTCCCTAGTT ACTCGTCTGA CTGGCATGCT GCACCTATTT 
    ATGAACGCGA TGGCGTGCCA ATTGGACCAA GGGCGAATTC TGACTGGCTT 
    TACATTGTAC CGTGGGGTTT GTACAAAGCT GTCACCTATG TCAAGGAGAA 
    GTATGGTAAC CCCACAATGT TTCTATCTGA AAATGGCATG GATGATCCTG 
    GCAATGTGAC CATTGCTCAG GGGGTGCATG ACACCACGAG GGTCGCCTAC 
    TACAGGAGCT ACATCACCAA GCTGAAGGAG GCGATCGACG ACGGCGCCAA 
    CTGCATAGGC TACTTCGCCT GGTCCCTGCT GGATAACTTC GAGTGGAAAC 
    TCGGGTACAC GTCGAGGTTC GGCCTGGTGT ACGTGGATTT CAGGACCCTC 
    AGGAGGTACC CCAAGATGTC GGCCTACTGG TTCAGGGACC TTGTCAGCAG 
    CAAAAACTGA GCTGGGCTTT CAACCTTGAT ATAACCACCT TTTCGTTTGC 
    AAAAATGCAC AAATAAGAAG GTGGGCCAAA TGAGTAGCTA ATAAATACAA 
    GTAGGGTTCT TAACAATCTT GAATGATGTC ATG

    Gene models with high sequence identity

    1. AT3G18080.1 [+] show detail - B-S glucosidase 44
      E-value: 0; Score: 749.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 1 8.2e-162
    Gene3D Glycoside hydrolase, subgroup, catalytic core 8.1e-173
    FPrintScan Glycoside hydrolase, family 1 4.3e-19
    FPrintScan Glycoside hydrolase, family 1 4.3e-19
    FPrintScan Glycoside hydrolase, family 1 4.3e-19
    FPrintScan Glycoside hydrolase, family 1 4.3e-19
    FPrintScan Glycoside hydrolase, family 1 4.3e-19
    superfamily Glycoside hydrolase, catalytic core 3.9e-178
    HMMPanther BETA-GLUCOSIDASE 3.4e-259
    HMMPanther Glycoside hydrolase, family 1 3.4e-259
    HMMPanther gb def: Hypothetical protein K10C2.3 0.00016
    HMMPanther Peptidase A1 0.00016

    See the detailed result >

    AT3G18080.1

    Model type
    Protein coding
    Short Description
    B-S glucosidase 44
    Computational Description
    B-S glucosidase 44 (BGLU44); FUNCTIONS IN: in 6 functions; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cytosolic ribosome, cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 43 (TAIR:AT3G18070.1); Has 11220 Blast hits to 10898 proteins in 1459 species: Archae - 142; Bacteria - 7700; Metazoa - 714; Fungi - 202; Plants - 1462; Viruses - 0; Other Eukaryotes - 1000 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR