K06846

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06846

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06846

Determination of introduced cDNA(s)

  • J013169J18 - Rice Full-length cDNAs - Original: J013169J18

    full reading [+] show sequence

    Nucleotide sequence: J013169J18 - full reading
    TGGAATCCCA TGATCCGTTG GGTACAAGGA AGAAGAGGAT ACTACTCTCC 
    AAGTAGCGAA AATCCACAAA TTCCCTCTCC GGCTCGCGCG CGCGCTCTCA
    ATTTTTTGGG GGAAGAGAAG ATCTCCCCTT GGAGGGAACC CCGCCCAAGA
    ATGGCGGGTC TCGGCGGCGG ATGGGGCGGC GGGTACGACG ACGACGACGA
    CTGGGGGCTG AGCGCGGAGC AGCTCGACCA GCTCGAGCGG GACGCCTACC
    GCAAGCTCGC CGAGCGCAAG GCCTCCTCCT CCGCCGCCTC CACCGCCACC
    TCGCCGCTCC CCTCCGCGGC CTACTCGCCG GTCAAGAACA GCCACCACCA
    CCCGGCATCC AGGGTTTCCC AGGAGTCTTG CTTCGGCAAG GTAGAATCAC
    TTTCTCCTTC TCGGCTTAGT CAACCAAATG CATCGGGAAA TGCAGTTAAT
    AATAGTCAGG GCAATATGTC TAAGGTATCA GTACATCTTT TCCTTCATTC
    TACTGGTGTG ATCGCAGCGA AGTTCCAGTA CCACCAGAAA CTTGTGGATG
    CAGTTCACAA GATCCCCAAA GCCAGCTGGA ACGGGAAGGA GAGGGTATGG
    ATGTTCCCAC ACTCATCATT ATCAGTAGCA GAGGAAGTTC TTAGTACAGT
    ACCTGGAATA GCTGTTGAGG TCCAAAAACT GGATCCGCTG GTTAAGCGCG
    CACTAACTGC TTCTTTATAT GCCGGAGATC TTCGAGATTT GTATGGCAAG
    ATTCCAACTG ATGTTGAGTC AAAGCTTATG CCGTTTCAGC GTGAAGGTGT
    CAGGTTTGCT TTACAGCATG GTGCCAGGAC CCTGATAGCA GATGAAATGG
    GTCTTGGCAA GACATTACAG GCAATTGCTG TTGCTTCTTG CCTTCATGAT
    GCCTGGCCAG TTCTTGTAAT CTCTCCATCA TCCTTGCGAT TACATTGGGC
    TTCTATGATT CAGCATTGGC TTAACATCCC CACGGAAGAT ATCTTGGTGG
    TGCTACCACA AACTGGAGGA TCAAATAAAG CAGGATACAG ATTGGTATAT
    TCAAATACTA AAGGGGATTT TAATCTGGAT GGGGTGTTCA ATGTGATATC
    TTATGATGTT GTTCCCAAGA TAAAGGACAT GCTTCTGGAC TTGGATTTTA
    AGATTGTTAT AGCTGATGAA TCACACTTTC TGAAGAATGC CCAAGCAAAG
    AGAACAATGC ATTCACTTCC TGTTCTGCAG AAAGCTAAAT ATGTGGTTTT
    GCTAAGTGGC ACCCCTGCGT TATCTCGCCC TATCGAGCTG TTTACTCAGC
    TCCAGGCATT GTATCCAACT GTATACAAGA ATGTTAATGA GTATGGTAAT
    AGATATTGCA AAGGTGGCTT TTTTGGGCTT TATCAAGGTG CTAGCAATCA
    TGAGGAGCTT CATAATTTGA TGAAAGCAAC TGTCATGATC CGCAGGTTGA
    AGAAAGATGT CCTTTCACAG TTGCCTGTTA AACGCAGACA ACAGGCCTTT
    CTGGATTTAA GTGAGAAAGA GATGAGACAT ATTCGTGCTC TATTTCATGA
    GTTGGAGACT GTGAAGATCA AAATCCAGTC CTGTGACTCC CAGGAGACGA
    TGGACTCTCT CAAATTTGCT CAGAAGAATC TTATTAACAA GATCTACAAT
    GATTCAGCTG AAGCCAAAAT TCCAGCAGTG CTAGATTACC TGGGTACTAT
    AATTGAGGCC GAGTGCAAAT TTTTAATATT TGCACATCAT CAATCCATGC
    TTGAAGCTAT TCACCAACAT CTCTTGAAAA AGAAAGTTAA GTGCATAAGA
    ATTGATGGTC AAACACCTGT ACCTGTAAGA CAGACTCTAG TCACAGATTT
    CCAGAATAAG GATGACATCA AGGCAGCAGT GTTATCCATA AAAGCTGGAG
    GTGTTGGGTT AACTTTGACA GCAGCAAGTA CAGTAATCTT TGCTGAGTTA
    TCATGGACTC CAGGTGACCT TATTCAAGCC GAAGACCGTG CCCATCGTAT
    TGGTCAGGTT TCTTCGGTGA ACATATATTA CCTTCTTGCA AATGACACTG
    TGGATGACAT TATATGGGAC GTTGTTCAAG GCAAACTTGA GAATTTGGGA
    CAGATGCTGG ATGGGCAGGA GAAAACGCTG GATGTGTCCC AGAGCGACAC
    TAGGCCCAGC CCTTCCAAGC AGAAGACGCT CGACGCCTAC CTCAAGCGAT
    GCAGCAATTC CACAGAAGCT GATCAGCCCA AGCTCAAGAA CCCTAGGTTC
    TGACATTTCT CAGGGTTTTT AGCTCTACTA TGTTTTTGTT TGGCAATTGG
    CATGACCCTC TTGCCTTAAA CGAAGGAATG CTGCAGTGTC AGGTAGCTGT
    GTGTTGGTGT TATGATCACA GCCATGCTGT ATTTTGTATT ACCCAGCTAA
    ATGCCCGTGC GTTGCAATGA AAATTAAGAA TAACTTTGAT C

    Gene models with high sequence identity

    1. AT1G48310.1 [+] show detail - chromatin remodeling factor18
      E-value: 0; Score: 855.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 14.552
    ProfileScan DNA/RNA helicase, C-terminal 14.323
    HMMPfam SNF2-related 1.1e-32
    HMMPfam DNA/RNA helicase, C-terminal 0.000000000014
    HMMPanther HARP (SMARCAL1)-RELATED 1.8e-166
    HMMPanther ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATE 1.8e-166
    HMMSmart DEAD-like helicase, N-terminal 2.3e-18
    HMMSmart DNA/RNA helicase, C-terminal 5.9e-18
    Coil coiled-coil 0
    Gene3D no description 0.000001
    superfamily P-loop containing nucleoside triphosphate hyd 4.1e-21
    superfamily P-loop containing nucleoside triphosphate hyd 1.3e-16

    See the detailed result >

    AT1G48310.1

    Model type
    Protein coding
    Short Description
    chromatin remodeling factor18
    Computational Description
    chromatin remodeling factor18 (CHR18); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (TAIR:AT5G07810.1); Has 16435 Blast hits to 14312 proteins in 1741 species: Archae - 101; Bacteria - 4551; Metazoa - 3441; Fungi - 3785; Plants - 1315; Viruses - 143; Other Eukaryotes - 3099 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR