K06849

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06849

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06849

Determination of introduced cDNA(s)

  • J023006E15 - Rice Full-length cDNAs - Original: J023006E15

    full reading [+] show sequence

    Nucleotide sequence: J023006E15 - full reading
    GACCGCGCAC GCGGCGAGGC TGCTTGCTAT CTCTTCCGGC CTTCCCTCTG 
    CTCTGCTCCC CCTTGCCGGC TCGGGCTCTC GGTTCTTGCA TTGCACCGCC
    GTCCACGGAG ATGGTCGCTG CGGCGGAGTG GTGGGAGGCC ACCATCGCGG
    CGTACACGGG GCTGTCTCCC GCGGCGTTCT TCACGGCCGT GGCGGTGGCC
    GCCGCGCTGT ACGTCGCGGT GTCCGGTCTC CTCACGCGGC GGCCGCCGCC
    GCTGCCTAGG AGACAGGAGG AGGCGAGGGC GTCGCAGCCG CTGCCGCCAC
    CGGTGCAGCT CGGGGAGGTG ACGGAGGAGG AGCTGAGGGT CTACGACGGG
    TCCGACCCCA ACAAGCCGCT GCTCATGGCC ATCAAGGGCC AAATCTACGA
    TGTCACGCAG AGCAGGATGT TCTATGGACC TGGTGGCCCA TACGCACTGT
    TTGCAGGCAG AGATGCTAGT AGAGCTTTGG CGAAGATGTC CTTCGAGCTG
    GATGATTTAA CCGGCGACGT TTCTGGCTTA GGCCCCATTG AGCTCGAGGC
    TCTACACGAA TGGGAGGGCA AATTCATGAG CAAGTACGTG AAGGTTGGAA
    CAATCAAGAA GATCATCCCG GTGTCAGAGG GAGATGCTGC AACTCATGGT
    GGGACATCTG ATAGAGGCAT CGATGTAGGC ACAATAGAGA GCAACCGTGT
    GCCAGAACCA GAGGAAAATG GAGCTACAAG TCATGCAGAT GCAGTGGAAA
    AATCAGATGC TGATGTGAGC ACACACAACC ACGAGGATGT TGTAGAGAAG
    TCGGATGAGC TGCTGGAATC AGGTGTGGAT ACTAGAAGCA CCCATGAAGA
    TGCAGTGGGG AAGCCAAAGG AAGAAACAGA AGATGCAGAT GTTCAGAAAA
    CGATCAGCAC TGAAGTTGCA GGTGAGGGAA AGGGAGCACC TGATGAAGAT
    GACAGGAACA CGTGCAGTCT GGAAGACGCA ATTGAGAAGC CAAAGGAAAC
    GGCATACATT GATGTGAAGG ATACAAGCGG CCATGAAGTT GCTGGAGAAC
    CAAAGGAAGC ACCAGATGTG GATGGGAACA ATACAAGCAG CAATCAAGAT
    GGCAGTGGAT GAGCCGAAGG AAGCGTCACA TGAAGCGAAG GAAGCGTAGA
    GTTGAGGCTA TTGCTGTGAT AATATCTGCA GGTAGTTAGC ATAATACAGT
    GTTGAATCAA CAGAGAACCA GCAGGTGAGC TCTGTTGGGT TGAATCTTTG
    TGTAGTGTGG AAATACCACT ATAATGCAAT AAGAATGTAA TAAGCTTGCG
    CTGGTCC

    Gene models with high sequence identity

    1. AT3G48890.1 [+] show detail - membrane-associated progesterone binding protein 3
      E-value: 2e-51; Score: 200.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Cytochrome b5 2e-31
    superfamily Cytochrome b5 4.4e-32
    HMMPfam Cytochrome b5 4.1e-16
    HMMPanther STEROID BINDING PROTEIN 9.8e-85
    HMMPanther MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-REL 9.8e-85

    See the detailed result >

    AT3G48890.1

    Model type
    Protein coding
    Short Description
    membrane-associated progesterone binding protein 3
    Curator Summary
    putative progesterone-binding protein homolog (Atmp2) mRNA,
    Computational Description
    membrane-associated progesterone binding protein 3 (MAPR3); FUNCTIONS IN: heme binding; LOCATED IN: chloroplast thylakoid membrane, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: membrane steroid binding protein 1 (TAIR:AT5G52240.1); Has 1079 Blast hits to 1069 proteins in 199 species: Archae - 0; Bacteria - 2; Metazoa - 428; Fungi - 337; Plants - 203; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR