K06906

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06906

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06906

Determination of introduced cDNA(s)

  • J013028M22 - Rice Full-length cDNAs - Original: J013028M22

    full reading [+] show sequence

    Nucleotide sequence: J013028M22 - full reading 
    GCCCTTCCCT CCCATCCCCC GATTCGCCAC CGCGAATCCC ACCACCACCC 
    GCAGATCTCC GCCTCGGCGC CATTGCCCAC CCTCCACGCC CCCGCCAGAT 
    TCGCCCAGAT CCACAGCCGG GTGCATCCGG CGGCGTGGCT GGGGCGCCCT 
    CGATCGGGAA GCTTTGATCT TCGTACCCTT TTTGCGGTGG GCGGGCGGCG 
    GGCGGCGGAG GAGGAGGAGA TGGGTGTCGG CGGGGAGAAG TTCCAGCTGG 
    GGACGGTGGG GGCGCTGAGC CTCTCCGTGG TGTCATCCGT CTCCATTGTC 
    ATCTGCAACA AGGCGCTCAT GAGCTCCCTC GGCTTCAACT TTGCCACTAC 
    CTTGACGAGT TGGCATCTTC TTGTCACATT TTGCTCCCTC CATGTAGCAT 
    TATGGATGAA GTTCTTCGAG CACAAGCCTT TCGACTCGAG AACTGTCATG 
    GGATTTGGAG TGCTCAATGG CATCTCCATT GGCCTCCTCA ACTTGAGTCT 
    TGGTTTTAAT TCTGTTGGAT TTTACCAGAT GACAAAGCTG GCTATCATCC 
    CATGCACTGT TATTTTGGAG ACTCTTTTCT TCAGGAAGAA GTTCAGCCGG 
    AGTATCCAAC TGTCCCTTTC AGTGCTCCTC TTTGGTGTCG GTGTTGCAAC 
    AGTGACTGAT CTGCAACTCA ATGCTGTGGG ATCCGTATTG TCCTTGCTGG 
    CAATTATTAC AACCTGCATC GCGCAAATTA TGACAAACAC TATCCAGAAG 
    AAGTTCAAGG TTTCTTCAAC CCAATTATTA TACCAATCTT GCCCCTATCA 
    ATCACTGACC CTCTTCCTTA TTGGTCCATT CCTTGATGGA TTTTTGACTA 
    ACCAAAATGT ATTTGCATTC GACTACACAT CCCAAGTTGT GTTTTTCATT 
    GTATTATCGT GCTTGATATC TGTCTCAGTG AACTTCAGCA CTTTCCTTGT 
    GATCGGAAAG ACTTCTCCTG TCACTTACCA AGTCCTGGGC CATCTTAAAA 
    CATGCCTAGT ACTGACCTTT GGTTATGTTT TGCTTCATGA CCCATTTAGC 
    TGGAGAAACA TACTCGGCAT CCTAATTGCA GTAGTTGGAA TGGTCTTATA 
    CTCATACTTC TGCACATTGG AGGGCCAGCA AAAAAACGCC GAAGTCTCCC 
    CACAACAGGC GAAAGAAGGC GATTCGGCTC CTTTGATCTC AGACTCTCTG 
    AGCAAAGTTG AGAATGGAGG TGGAGTGGTT GATGATGAGC CTCTCAAGGT 
    ACCGATGTGG AGCTCAAAGT ACTCAAGGGC GTGAAAATAC CTTCCTTTTA 
    GAAGGCGGCA TTATACAGGA TTCAATTTGG TAGGCGGATA GTAGGGTTGG 
    AAGCCAACCC AGATTGTAAT GAACATTCCA GTTACATTTT TGGGTTTATT 
    TAACATTACT ATCTAGTATC TACTAGCAGT AAAAGGGTTC TTGGGAGGAT 
    TTTACCTTCA AGATAGCAGA TCTGCCTTGA AACTTAGACA ACAGATATTG 
    TATGATTGTA TCTGGATATG CTCCACATCT TTCTCACTGT AACTTCCTAT 
    GGGAACATAG ATCCACAGAT AGACTTCATT CTTTTGTACC AAAGATCCAG 
    AGAACTAGAG ATCTGCAAGG TTCAAGTTTG TGACTGTAAG TTTATGTTTA 
    CTTTGGACCC AGTGATGGAG CTTTTGTATA TTTAGGACCA AGTGCAAAGA 
    GGGGTTCTTT TCC

    Gene models with high sequence identity

    1. AT1G06890.2 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
      E-value: 5e-131; Score: 465.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF250 4e-33
    superfamily Multidrug resistance efflux transporter EmrE 3e-06
    superfamily Multidrug resistance efflux transporter EmrE 4.1e-05
    HMMPanther SOLUTE CARRIER FAMILY 35 4.1e-90

    See the detailed result >

    AT1G06890.2

    Model type
    Protein coding
    Short Description
    nodulin MtN21 /EamA-like transporter family protein
    Computational Description
    nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2); Has 2654 Blast hits to 2649 proteins in 293 species: Archae - 2; Bacteria - 105; Metazoa - 662; Fungi - 435; Plants - 1177; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR