K06918

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06918

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06918

Determination of introduced cDNA(s)

  • J033132G05 - Rice Full-length cDNAs - Original: J033132G05

    full reading [+] show sequence

    Nucleotide sequence: J033132G05 - full reading 
    GACATCCCCC CCCCCCCTTC CCCTCCTCAC CTTCCCTTCT CCGGTTCTCA 
    GATTCCACCC AATCCGCCGC TGCGTCGCGT GTGCTGTTCG GCGAAATTCC 
    AAGCCCCAAT TCCCCACATC TCATGGTTCT CTCTCCCATC GCCTCCGCCG 
    ACGTCGACCG CCTCCTTTGC TGCTGTCGCC GGTGTTGTTG CTGTCGCCGG 
    TGTTGTTGTT GTTGAGGGGG TAACGGTGGT GGTGGTGGTG GTGGTGAGGG 
    GTTAGAGGGG CTAGGGTTGC GGATTTGCGG CCAATTGGTT GGGGGATTTC 
    GAAGGGGGAA TGGATCTCTC GCGGCCGGAA TCGTCGGACC TGTCGCTGGG 
    TTTCCACTCG CTCGGCCACG CCCGCGGGCA CGCGGTCACG GGGCCGCTGC 
    GGCTGTTCGA TGACATGGAG GACGCCAAGC CGGAGAAGAG CGTCGGTGGC 
    GGCGGAGGAG GAGGGGGAGG AGGAGGCGAG GAGGAGGATG GGGAGGAAGG 
    GGGCGACCAG CACTTCTCCC TCCTCGGCCA CGCGCTCTGC GTCAAGCGTC 
    CACGCCGCGC GCTCTACGGA GGCGGAGGCG GAGGCGGGGC AGGAGGTGGA 
    GGAGGAGGAG GAGGGGAGGC GTCCTCCTGC TCGTCTTCCT CCTCGTCGCT 
    GCACCCGGCG AAGCGGCAGG CGACGGCGGA GCGCGGCGCG GATCTGGAGG 
    CCCGCCGCGG CGCCGTCCGC GCGTGGGGCA ACCAGGCGCT GGCGGAGGCC 
    GACCCGGACG TGCACGCGCT GATGGAGCTC GAGCGCGACC GCCAGGTGCG 
    CGGGATCGAG CTGATCGCGT CGGAGAACTT CGTCTGCCGC GCGGTGCTCG 
    AGGCGCTCGG CAGCCACCTC ACCAACAAGT ACTCTGAGGG CCATCCCGGG 
    GCTCGGTACT ATGGCGGGAA CCAGCACATC GACGGCATCG AGCGCCTCTG 
    CCATGAGCGC GCCCTCGCCG CCTTCGGTCT CGACCCCGCC TGCTGGGGGG 
    TCAACGTCCA GCCATACTCC TGCACCTCTG CAAACCTAGC TGTTTACACA 
    GGTCTCCTCC TGCCCAAGGA CCGTATCATG GGGCTCGAGC CGCCTTCCGG 
    TGGCCATGTC AGCCACGGGT ACTACACACC AAGTGGTAAG AAGGTGTCTG 
    GAGCATCCAT ATTCTTCGAG AGCTTGTCGT ACAAGGTGAA TCCGCAGACT 
    GGGTATATTG ATTACGACAA GCTTGAGGAG CGGGCAATGG ATTTCCACCC 
    TAAGATTCTC ATATGTGGTG GGAGCTCATA CCCCAGGGAG TGGGATTTTG 
    CACGGATGAG GCTCATTGCT GATAAGTGCG GTGCGGTGCT CATGTGCGAT 
    ATGGCACATA TCAGCGGGCT TGTTGCGGCC AAGGAATGCC GTAGTCCCTT 
    TGATTACTGT GATGTGGTTA CATCAACTAC TCACAAGAAT CTGAGAGGTC 
    CTAGAGGTGG TATAATATTT TTCAGGAGAG GGAAAAACTT AAGGAGGCGT 
    ACTGGATCTT TTTCTCAAGC GGATGAGAAT GATTATGACT TCGAGGACAG 
    GATAAATTTT GCAGTTTTCC CTTCAATGCA AGGAGGACCC CATAATAATC 
    ATATTGCAGC CTTGGCGATA ACTCTGAAGC AAGTAGCAAC ACCTGAATAC 
    AAAGCATACA TCATACAAGT TAAGAAAAAT GCCCAAGCTT TGGCATCAGC 
    CTTACTCAGA AGAAAATGCA GATTGGTTAC TGGTGGCACC GATAACCACT 
    TGGTACTTTG GGACCTCAGA AATTTAGGCT TGACTGGAAA GAACTTTGAG 
    AAGGTCTGTG AGGCATGCCA CATCTCCATA AATAAGATGC CGATATATGG 
    GGATAATGGC TCAATATCTC CTGGGGGTGT TCGGATTGGA ACACCTGCAA 
    TGACTACTAG AGGTTGCTTG GAAGATGACT TTGAGGTGAT CGCAGATTTC 
    CTCATCAGAG CCACCCAAAT AGCTAGTAAT CTTATGAAAG AACATGGAAA 
    AATGCAGAAG GAATTCCTGA GAGGCCTACA GAACAATAAA GATATCATAG 
    AACTCCGTAA CCAGGTTGAG AATTTTGCAT CGCAGTTTGC AATGCCAGGT 
    TTTGATGTAT GAGTGTGCAT GTATGTGTAC ATATCTTGGT GAGGTTGTCC 
    AGATTCATCA GGAATTAGCA ACCGTTTCAC TCTTTGCCGA AGTGTTTCTT 
    TCAACAGGAG CAGAATAGGG AAAGATCGTT TTTTCTTTTG TTGGAAATTG 
    GTCTTGACTG AAGCTGTACA TGCATACTTC TGAGTTGTCA TTTATGTAAC 
    GTATTGAACC TTCATATAAC GGCTTTGTAT AGGAGATAAT TTTCCTCC

    Gene models with high sequence identity

    1. AT1G36370.1 [+] show detail - serine hydroxymethyltransferase 7
      E-value: 0; Score: 724.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Pyridoxal phosphate-dependent transferase, major domain 2.2e-162
    HMMPfam Serine hydroxymethyltransferase 1.5e-167
    HMMPanther Serine hydroxymethyltransferase 1.2e-274
    PatternScan WD40 repeat, conserved site 0
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 4.1e-93

    See the detailed result >

    AT1G36370.1

    Model type
    Protein coding
    Short Description
    serine hydroxymethyltransferase 7
    Curator Summary
    Encodes a putative serine hydroxymethyltransferase.
    Computational Description
    serine hydroxymethyltransferase 7 (SHM7); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: response to cadmium ion, glycine metabolic process, L-serine metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 6 (TAIR:AT1G22020.1); Has 11689 Blast hits to 11664 proteins in 2845 species: Archae - 258; Bacteria - 6485; Metazoa - 362; Fungi - 287; Plants - 350; Viruses - 6; Other Eukaryotes - 3941 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR