K06922

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06922

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06922

Determination of introduced cDNA(s)

  • J023068M15 - Rice Full-length cDNAs - Original: J023068M15

    full reading [+] show sequence

    Nucleotide sequence: J023068M15 - full reading 
    GGGATAGTCT CCTCCCTCCA CCACCACCAC CTCCTTCCAC GATCCCTCCC 
    CCTCTTGATC CCATCCGCCG CCGGAGGAGA TCTTGCCGTT CTTGCGCTTG 
    GATCTAGACC GCAAGATCGG TGAACGGCGA CGCTCTCATT GGTTGGTTTA 
    TTAGTTGGCT GGTTTCTCTC TCCTCGTCGA TTCTTCTCCG GCGAACACGC 
    CGCCGCCGCC GCTTCGGATT CAAGGATCTT GCATTGCCTG TCTTTCCAAT 
    TTCACATTGG ATTTACTCGA ACTGATTCGT GCTGAAACAA ATTTGACCAA 
    GAAAAGAAGA GGAGGTCATC AGCAGGATGA AGAGGGTGTC GTCCCACGTC 
    TCCATCGCCT CGGAGGCGGA GATCAACCTC GATCTCTCGC GGCTCCTCAT 
    CGACAAGCCG AGGCTGACGC TGGAGAGGAA GAGGTCCTTC GACGAGCAGT 
    CGTGGAGTGA GCTCTCCCAC CGCCAGAACG ACGGCTTCGA CAGCATCATG 
    CACTCCCCGG CGTTCCCCTC GGGCTTCGAC TCGCCCTTCT CGCTGGGGAC 
    GCTCGGTGAT CCCCACCCGC TCGTGAACGA GGCGTGGGAG GCTCTCAGGA 
    AGTCCGTGGT GTACTTCCGG GGGCAGCCGG TTGGGACGAT TGCCGCCGTC 
    GACCATGCGT CCGAGGAGGT GCTCAATTAT GATCAGGTTT TTGTGCGAGA 
    TTTTTTTCCA AGTGCATTGG CTTTTCTAAT GAATAATGAG ACTGATATAG 
    TGAAAAACTT CCTCTTGAAA ACACTCCACC TGCAAAGCTC GGAGAAAATG 
    GTAGACCGTT TCAAGCTTGG AGCAGGAGCG ATGCCTGCAA GTTTCAAGGT 
    GGATCGTAAT CGGAACAGAA ACACTGAAAC TTTAGTTGCA GATTTTGGTG 
    AGAGTGCAAT TGGGAGGGTG GCTCCAGTGG ACTCTGGATT TTGGTGGATT 
    ATTCTACTCC GGGCATATAC AAAGTATACG GCAGATACTA GTTTGGCAGA 
    ATCACCAGAG TGTCAGAACT GCATGAGGCT GATACTGAAC CTATGCTTAT 
    CTGAGGGATT TGATACCTTC CCAACTCTGC TCTGCACAGA TGGCTGCTCA 
    ATGATGGATC GTCGAATGGG TATATATGGT TATCCTATTG AGATCCAAGC 
    TCTATTCTAC ATGGCGTTGA GATGTGCTCT GCAGATGCTT AAGCCAGATG 
    GTGAAGGGAA GGATTTCATA GAAAAGATAG GGCAACGGCT ACATGCTCTA 
    ACCTACCACA TGAGGAATTA CTTCTGGCTA GATTTCCCAC ACCTGAATAA 
    CATATACAGA TATAAAACAG AGGAGTATTC ACACACTGCT GTGAACAAAT 
    TCAATGTCAT CCCGGATTCA ATCCCTGACT GGGTGTTTGA TTTCATGCCA 
    TGCCGGGGAG GCTACTTCCT TGGCAACGTG AGCCCAGCTA TGATGGACTT 
    TCGGTGGTTT GCCCTTGGAA ATTGCATTGC CATTATATCA TCTCTGGCTA 
    CTCCAGAGCA ATCAGTGGCA ATAATGGATC TGATTGAGGA GCGGTGGGAA 
    GAGCTAGTTG GTGAGATGCC TCTGAAGATA TGTTACCCTG CAATTGAGAA 
    CCATGAATGG AGAATAATCA CTGGCTGCGA CCCGAAGAAC ACCCGGTGGA 
    GTTATCACAA TGGAGGATCA TGGCCAGTTC TCCTGTGGCT GCTGACAGCA 
    GCCTGCATCA AGACTGGGCG TCCGCAGATG GCGAAGCGCG CCATTGAGCT 
    CGCCGAGTCC AGGCTACTGA AGGACGGCTG GCCAGAGTAC TACGATGGCA 
    AGCTGGGACG GTTCATCGGC AAGCAGGCCA GGAAGTTCCA GACATGGTCC 
    ATCGCTGGCT ACCTCGTAGC CCGTATGATG CTGGAGGACC CGTCGACGCT 
    GATGATGATC TCCATGGAGG AAGACCGGCC GGTGAAGCCG ACCATGCGAC 
    GGTCAGCATC ATGGAATGCC TGAAATGTTT TGATAGAATT TTTTTTTCCC 
    AAAGAGAGGT TCAATGTGGA AACTTATAGG AGTTTTGTCC AAACATGAAA 
    ATGGGGTTCA AAATTTACTG TAACTGTACT GTCAGTTAGG ACAGAAGTGT 
    ATACGATAGA TCCAAGTCGT TTCAGAGCAA TTTTGTCCAA CTTTTCGTAT 
    CTGGCTTCAT CAATCCAACA GAGAAGAAGT TTTTGTTGGT GAAACATTTT 
    TGCAATAATT AAACAGTTTT GTCTTGACAT ATATACTAGC ATATGTTTCT 
    GTGATGGATA ATTCTTTGTA ATACTTTGTA GGACTTTCTG TTAATATACT 
    CCTCACATAT TTTCATTGTG G

    Gene models with high sequence identity

    1. AT4G09510.1 [+] show detail - cytosolic invertase 2
      E-value: 0; Score: 856.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Six-hairpin glycosidase-like 4e-29
    HMMPfam Plant neutral invertase 9.2e-238

    See the detailed result >

    AT4G09510.1

    Model type
    Protein coding
    Short Description
    cytosolic invertase 2
    Curator Summary
    CINV2 appears to function as a neutral invertase based on the phenotype of a cinv1(AT1G35580)/cinv2 double mutant. It is predicted to be a cytosolic enzyme. CINV1, CINV2, and possibly other cytosolic invertases may play an important role in supplying carbon from sucrose to non-photosynthetic tissues.
    Computational Description
    cytosolic invertase 2 (CINV2); FUNCTIONS IN: sucrose alpha-glucosidase activity, beta-fructofuranosidase activity; INVOLVED IN: sucrose catabolic process, using invertase or sucrose synthase, root development; LOCATED IN: cytosol; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: cytosolic invertase 1 (TAIR:AT1G35580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR