K06926

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06926

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06926

Determination of introduced cDNA(s)

  • J013002M11 - Rice Full-length cDNAs - Original: J013002M11

    full reading [+] show sequence

    Nucleotide sequence: J013002M11 - full reading
    GAATCCCCCT CCTTCCTCGA ATCTTCGCTT CCCCCCCCCC CCACCCTTCT 
    CGCCGCGCCA CCGCCTCTAC AAATCCACTA AACCCCCTCC TCCGCCTCGC
    CGCCGCCATG GGCTCGTCGG CGGCCGACTC GTTCCCCGCT TGTGGAGATG
    ATGCAATCCG AGACGTGTAC GGCATCGGTG GTGGTGGGGA GGAGGACGAT
    CCGTCCCTCT TCCTCTACCT CTCCGACCTC GCCCCCGTCT CCCCCTCCGC
    CTACCTCGAC CTCCCCCCCT CGCCGCCGCC GCCGACGACG ACGGCGACGA
    CGATGGTGAA GGAGGGGGAG GAGGCGCCGG AGGACCTGGT GCTGCCGTTC
    ATCTCGAGGA TGCTGATGGA GGAGGACATC GACGACAAGT TCTTCTACGA
    CTACCCCGAC AACCCGGCGC TGCTCCAGGC GCAGCAGCCC TTCCTCGAGA
    TCCTCTCCGA TCCCTCCTCC AACTCCCGCT CCTCCAACTC CGACGACCCC
    CGCCTCTCCC CGACCTCCTC CTCCGACACC TCCGCCGCCA TCAACTCCTA
    CGACGCCGCC GCCACCGCCA CCGCCGTTGC CGCCGCCGCG GTGCCCGTGC
    CGCAGTACGA GAGCATCGAG CTCGATCCCG CCGCGTTCTT CGCCGCGGCC
    AACTCCGACC TCATGAGCTC CGCCTTCCTC AAGGGGATGG AGGAGGCGAA
    CAAGTTCCTC CCCACCGAGA ACAAGCTCAT CATCGACCTC GAGGCCTCGT
    CGGAGAATAA TTACCTCAGG GGTCTCGAGG AGGCCAAGAG GTTCCTGCCC
    AGCGACGACA AGCTTCAGGT TGGATTCGCT GCGGCGGCGG CGCCTGTGGT
    GAGCGTGAAG AAGGAGGCGG TGGATGTGGT GGTGGCAACC GCCTCGGGCG
    GCGGCGGACG AGGGCGGAAG AACCCGTACG ACGACGAGGA GCTGGAGCTG
    GAGGGAGGGA GGAGCAGCAA GCAGACCGCG GTTCAGGGGG ACGATGTCGC
    GGCGCGCGCC ATGTTCGACA AGGTGATGAT GCCCTCCCAT GAGAATTGCA
    CCGAGATGAT GGAGAAGCTG AGGATTGCCA TGAAGGAGGA GGCGGCCAAG
    AACGAGGCCA GCGCCGGCGG GAAGGGTGGG AACGGGAAGG TGAAGGGAGG
    GCGGCGGGGC GGGAGGGACG TGGTGGACCT GCGCACGCTG CTCATCCACT
    GCGCGCAGGC CGTGGCCACC GACGACCGCC GGAGCGCCAC CGAGCTGCTT
    AAGCAGATCA AGCAGCACGC GAAACCGACC GGCGACGCGA CGCAGCGCCT
    TGCTCATTGC TTTGCTGAGG GCTTGCAGGC GCGGATCGCT GGCACGGGCA
    GCCTGGTGCA CCAGTCGCTC GTGGCTAAGC GCACCTCAGC CGTGGACATC
    CTCCAAGCGT ACCAGCTGTA CATGGCTGCC ATCTGCTTCA AGAAGGTGTC
    CTTCATTTTC TCCAATCAAA CCATCTACAA TGCTTCCTTG GGTAAGAAGA
    AGATACACAT CGTTGATTAC GGTATACAGT ATGGGTTCCA GTGGCCGTGC
    TTCCTGCGGC GGATATCACA AAGGGAGGGT GGGCCACCGG AGGTAAGGAT
    GACTGGCATT GACCTCCCCC AGCCTGGTTT CCGGCCAACT GAGCGTATTG
    AGGAGACAGG GCACCGGCTC AGTAAATACG CCCAGGAGTT TGGGGTGCCA
    TTCAAGTACA ATGCCATTGC AGCGGTTAAG ATGGAGTCAG TCCGCAAAGA
    GGATCTGAAC ATTGATCCTG ATGAGGTGCT CATTGTGAAT TGCCAGTATC
    AATTTAAGAA CTTGATGGAT GAGAGTGTTG TGATCGACAG CCCAAGGGAT
    ATTGTGCTCA GCAACATCCG GAAGATGCAG CCTCATGTGT TCATCCATGC
    AATAGTGAAT GGCTCATTCA GTGCACCATT CTTTGTGACA CGGTTCCGGG
    AGGCTTTGTT CTTTTACTCG GCCTTGTTCG ATGTTCTGGA TGCAACTACC
    CCAAGGGAAA GCGAACAGCG GCTGCTGATT GAGCAAAACA TCTTTGGACG
    AGCTGCTCTG AATGTCATTG CGTGTGAGGG CATAGATCGG GTGGAGCGCC
    CTGAGACATA CAAGCAATGG CAGGTGCGGA ATCAACGGGC TGGCTTCAAG
    CAACTGCCAT TGAATCCAGA AATTGTTCAG GTAGTGCGGA ACAAGGTCAA
    GGACTGCTAC CACAAGGACT TCGTGATAGA TATAGATCAC CAATGGCTCT
    TGCAAGGATG GAAGGGACGA ATACTCTATG CCATCTCAAC ATGGACGCCA
    AATGATGCTC TCTCTTATTT TTAGTTGTTT TTTTTTTTGG CATCGCGACA
    AATATAAGAT CTAGGTATTT CAATAAGATG GCTAGTGGCA GTATGTCATG
    TATGAAGATC GATGGTGTTG GTGTTGGTTT GATGGACCCA ATGACTTGAG
    GCTATGAGGG AGAATTGGTA GCCCAAGTTG TTGAAGCCAT AAGATAACCA
    AGCATGCATG TAGATATCCA TGTTTTTATG TGATGTTAAT TAGTTGCTTC
    TGTTGTCATG TTGCAGCTTA GTGCCACACT ACCACTTAGA AAATAGACTT
    AGGTCCTGGT CCGGATGATG TTCGCTGCAG CGTCACCGGT TCTTGCGATC
    AATCCAGTCA GTTGATCCGG TTGTAATTGA CACCAGTTAC TCTGTTTTTA
    CTAGGTGCTT ACTGCACTGT GGCAGACAGT AACATTGTAA TATGCTCAAA
    ATGTTGAACT GGGTTTTGGC TAGTCC

    Gene models with high sequence identity

    1. AT2G37650.1 [+] show detail - GRAS family transcription factor
      E-value: 2e-132; Score: 470.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transcription factor GRAS 5.6e-108
    FPrintScan PRICHEXTENSN 0.00000000012
    FPrintScan PRICHEXTENSN 0.00000000012
    FPrintScan PRICHEXTENSN 0.00000000012
    FPrintScan PRICHEXTENSN 0.00000000012
    ProfileScan Transcription factor GRAS 63.733

    See the detailed result >

    AT2G37650.1

    Model type
    Protein coding
    Short Description
    GRAS family transcription factor
    Computational Description
    GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCARECROW-like 14 (TAIR:AT1G07530.1); Has 2417 Blast hits to 2350 proteins in 288 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 2410; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR