K06931

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06931

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06931

Determination of introduced cDNA(s)

  • J013055F13 - Rice Full-length cDNAs - Original: J013055F13

    full reading [+] show sequence

    Nucleotide sequence: J013055F13 - full reading 
    GCTTCCTCGC CTTCCTCGAG TTGAGCTCTC GCTCCGCCGC CGGCCGCCGC 
    CTCGAGCTGG GAGGCGGCCA TGGGCGCCGC CGGCCTCCCG GCACCGGGAT 
    GCCTGCAGAA ATTTGGACAT ATCGTTGATG CCGAAAGATT TGTATTAAAC 
    ATGTCCAACC GTGGAATCCA TAAGGCACTC AGTTTTCAGT GCTTTGCTTC 
    TGATGGGCGT GGCTTTGGAG CTGGTTCTAC TAATAGACGG AAAATTAAAA 
    GCAAGAAGAG GCAAAAGGAT GTTGCACAGG AACCAAGCAA GGTAATATCT 
    GGAGGTTCCA AGAACAGGGA CCAATGGGCA CTGGACTTAG GGACTCGAAG 
    GGAAAGTAAA TATGCTAAAA CTGTCATGGA TAAGCAATTT CTAGAAAAAG 
    TGGAAGCTGT TCGAAGATCT GCACTTGAGA AAAAGAAAGC TGATGAGAAC 
    AAAAATTATC AAGCTATTGA TTATGATGCC CCAATTGAAT CAGATAAGAG 
    TACAATTGGT TTTGGTACGA GGGTTGGAAT TGGCATAGCT GTCATGGTCT 
    TGCTCCTCCT CCTCTTTCCC CTTCCTCTCG CCGCCCCAAA TCACCCGCCC 
    ACCAAAACCC TCGCCGCGGC CTCCGCCGCA GCGGGATTCC GGCCACCACC 
    AGCAGCCGCC GCGGCCACCG GGGCGCCCTC CTCCTCCTGC CCCCCGGCAC 
    CGGCGACCGA CCATCCCCTT GCCCCCTTTC CCCGTCGGGT TGTGAGGCGA 
    GATGAGGGAG CTGCGCGTCG CCGTCCTCAT CATCGCGGTC TCGCTGCCGT 
    CCTTCTCCGC GTCCGACCGC CAAGGAGATG CCTTATATGA TATGAAACAA 
    AAACTGAATG TTACTGGCAA TCAGCTTTCG GATTGGAACC AAAATCAAGT 
    CAACCCTTGT ACATGGAATT CTGTAATTTG TGACAATAAC AACAATGTTA 
    TTCAAGTAAC ATTGGCTGCT CGTGGATTTG CTGGAGTTTT GTCACCAAGA 
    ATTGGAGAAC TGAAATATTT GACTGTCCTG TCCTTGGCTG GTAATAGGAT 
    TTCCGGTGGC ATACCAGAGC AATTTGGTAA TCTTTCTAGT TTGACAAGCT 
    TAGATTTAGA AGACAACCTT TTGGTGGGAG AAATACCAGC TTCTCTTGGC 
    CAGCTTTCTA AGCTCCAGTT GTTGATACTT AGTGATAATA ATTTCAATGG 
    ATCAATTCCT GACAGTCTAG CAAAAATCTC AAGCTTGACT GACATCCGGC 
    TGGCGTACAA TAATCTGTCT GGTCAGATAC CTGGTCCGTT ATTCCAAGTA 
    GCACGTTACA ACTTTTCTGG TAATCACTTA AATTGTGGAA CCAACTTCCC 
    CCACTCTTGC TCAACCAACA TGTCCTACCA GAGTGGATCC CATAGCTCAA 
    AAATTGGCAT AGTACTTGGA ACAGTTGGAG GAGTAATAGG ACTTCTCATT 
    GTAGCTGCTC TCTTTCTGTT CTGTAAAGGG AGGAGGAAAA GCCATCTGTG 
    GGAAGTTTTT GTGGATGTAG CAGGTGAGGA TGATCGACGA ATTGCATTTG 
    GCCAGCTCAA GAGATTTGCA TGGCGAGAAC TACAAATCGC GACGGATAAT 
    TTCAGTGAAA GAAATGTTCT CGGGCAGGGA GGTTTTGGTA AAGTTTACAA 
    AGGTGTTCTT CCAGATGGTA CTAAGATTGC TGTAAAACGA TTGACTGATT 
    ATGAAAGTCC TGGTGGTGAG GCCGCCTTCT TGCGTGAGGT GGAGCTGATT 
    AGTGTTGCAG TTCACCGCAA TCTTCTAAAA TTGATTGGCT TCTGCACAAC 
    ACAAACAGAG CGCCTCCTGG TATATCCATT CATGCAGAAT TTGAGTGTTG 
    CCTACCGATT GCGAGATTTT AAGCCTGGAG AACCTGTCTT AAACTGGCCA 
    GAAAGAAAAC GGGTGGCCAT TGGTACAGCA CGTGGACTAG AATATCTGCA 
    TGAACACTGC AACCCAAAGA TCATACACCG TGATGTCAAA GCGGCGAATG 
    TCTTGCTTGA TGAGGACTTT GAACCTGTTG TTGGTGATTT TGGACTAGCG 
    AAGCTAGTGG ATGTGCAGAA GACATCTGTC ACTACTCAAG TCCGTGGAAC 
    AATGGGTCAC ATAGCACCTG AATATCTATC CACAGGGAAG TCATCAGAGA 
    GAACTGATGT TTTTGGCTAC GGGATCATGC TTCTTGAGCT TGTGACTGGC 
    CAGCGTGCCA TTGACTTCTC ACGCTTGGAG GAAGAGGACG ATGTTCTATT 
    GCTCGATCAT GTAAAGAAGC TACAAAGAGA AGGGCAGCTA GGATCCATTG 
    TGGACCGCAA CCTGAACCAG AATTATGACG ACGAGGAAGT TGAGATGATG 
    ATACAGATAG CATTGCTGTG CACACAGTCA TCGCCCGAGG ATCGGCCATC 
    CATGTCAGAG GCGGTTCGGA TGCTAGAAGG CGAGGGGCTG GCGGAGCGGT 
    GGGAGGAGTG GCAGCAGGTG GAGGTGACAA GGAGGCAGGA GTACGAGCGG 
    ATGCAGCGGC GGTTCGACTG GGGAGAGGAC TCTGTCTACA ACCAGGAAGC 
    AATAGAGTTG TCTGGAGGTA GATGACAAGG GCCGTGACAA CAGACATCAA 
    ACAAACGGCG TAAGCCGAAT CTGTACTTTT TCTGTAATGG ATGTAGCGTT 
    GTTCTTTGTA GAGTAGATAG AATTGTCCTG GAACAACAGC GTAAGCGATA 
    GCTGGTAAAT GATACAATCG GATGGATAAT GATATGATAG AAAAATAAAG 
    TTGTATGTGT TTGGTTGGGC ATGGCTGAAC CTTAGCAGTT GTGTGCTCCC 
    CATGCACTGT TATCAAATCG GCCGATTAGT CGTAAAGTCG GTCAAATTAG 
    TTGACTAAGA GCCATGACTC TGACCAAATT AGTCGTAAAG TCGGTTGTAA 
    ATTAGTCGTG ATTATTGTAG CAAATCACCA ATTCACCGTG CTAATTGGCT 
    TATTGTGTTT AGTACTTT

    Gene models with high sequence identity

    1. AT5G10290.1 [+] show detail - leucine-rich repeat transmembrane protein kinase family protein
      E-value: 0; Score: 796.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 34.93
    HMMSmart Serine/threonine-protein kinase domain 2.8e-28
    HMMSmart Tyrosine-protein kinase, catalytic domain 3.1e-27
    HMMPfam Serine/threonine-protein kinase-like domain 1.8e-41
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 0.0000000016
    HMMPfam Leucine-rich repeat 0.51
    HMMPfam Leucine-rich repeat 0.85
    HMMPanther PROTEIN SERINE/THREONINE KINASE-LIKE PROTEIN 1.4e-287
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.4e-287
    superfamily Protein kinase-like domain 2.3e-77
    superfamily L domain-like 3.6e-36
    Gene3D no description 5.1e-37
    Gene3D no description 1.3e-23
    Gene3D no description 1.5e-46
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    Coil coiled-coil 0

    See the detailed result >

    AT5G10290.1

    Model type
    Protein coding
    Short Description
    leucine-rich repeat transmembrane protein kinase family protein
    Computational Description
    leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G65240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR