K06932

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low saturation (PATO:0000328) (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06932

Determination of introduced cDNA(s)

J033074P11 - Rice Full-length cDNAs - Original: J033074P11

full reading [+] show sequence

GCGCCGCCAC ACCTCCACCT CTCCTCTTCC TTCCCCTCGC CGCCGCCGCC 
TTCTCGTCGA CGCAGCCATG TCGGCGGCGC AGCAGCAGAA GCACGAGGTG 
GACCGGGCGA CGGTGGCCGG AGCCGTGGCC GCGCTGTTCA AGTGGATGCG 
CGCGCGCGCG GCGGAGGCTC CACCGAACCT CCTCGCCGAC GAGCGCGACG 
ACCTCCTGCT CCTCCAGCTC TCCCTCCGCC GCATCCCGCC CTCACCGACG 
ACCAAGCCGC GCCTCCTTCC GCTCCCCCAC CCCGTCATCG TCCCCGGCGA 
GTCGGCCTCC ATCTGCGTCA TCTCCGACGA CCGCCCCAAG TCCCGCTCCC 
CGGCCGCCTC CGACCTGCTC GACGCGTCCA GGTCCCACCA CCTCCCCGTC 
TCCGAGGTCA TCCCGCTCTC CGCCCTCCGC ACCGACTACC GCCCGTACGA 
GTCCCGCCGC CGCCTCGCCG CCTCCCACGA CCTCTTCATC GCCGACCGCG 
CCGTCCTCCC GCTGCTCCCG CGCGTCCTCG GCAAGGCCTT CTACTCCACC 
AAGAAGGCCC CCGTCGCCGT CGACTTCGCC CGCACCGGGT GGCTGGAGCA 
GGTCCGCAAG GTGATGAACT CGACTTTTCT CTACCTGCGG ACGGGCACCT 
GCTCTGGGAT CAAGGTTGGG AGGCTGGACA TGAAGGAAGA GGACACCGTG 
GAGAATGTGA TGGCGGCGGT GGAGGCGGCC GTGGAGAATG TGCCCAAGAA 
GTGGGCGAAT GTGAGGTCTC TCCATTTGAA GGCTGTGGAT TCAGTTGCAT 
TACCAATTTA CCAGGCTGTG CCGGAGTTGG GCATGAAGAT CGAGGTCCGG 
TTTGCACAAT TGGAGGGAGA AGTCGGTTCC GGGGAGGTTA TCGATGCTTC 
GGAAGCTGGA GCTGCACTGA AGGGTGTCGG CAAGAAGAAG GCGAAGAAGG 
CATTGAAACA TGTGGAAGAA GAGAATGCTG GTGAGGAAGC TGCACAGGAG 
AGTGGCAAGA GGAAGAGGGG TAAGAAGCAA CTAGCTGAGG ATTTGATGGA 
GCAAGACATC CAAGATGTGA GTGAGAAAAG GAAGAAGGTG AAGGAGGGCA 
CCCCTGCTGC CGAAACGCCG AAGATTAGCA AGAAGGGTAA GGAGAAGAGC 
AAGCGTGCAT TGGACAAGGA GGGGGAGGAT GCAAGTGTGG AGGAAGCCAG 
TAACAAGAAA AAGAAGGGCA AGAAAGAGGT GGTGAGTGAT GTTGGGGAGA 
AGAACAGCAA GGTGAAGAAA TCAAATGGTG ATAAGGAGAA GAGAAGGACC 
AGATTAAGGG TATAGGTTTT ATTCTCTATC TCCTGAGAGA TGCTTGTGAT 
ATTGGTTGAT CGACAGTGTC GTGATGTTCA TCGTGTTGAT TAGCTGGGCT 
AATCTGATAG TTTATCTGCT GGCAGAAGAA CTATGCCACT GTCAAGTTTT 
TGGTAGCCTT GTAGTACTTT ATAAGATCTC CAATCTACCG CAGAATGTTC 
TACTTTTGTG TGCACTAGAG GTGTCTTCAA AAGTTGTATC TTTTGTTTTT 
GTTAGCTTAC TAGCCTGACT GCCTGAGCCT TCAGGTTAAA GATAGTATGG 
TAAAACTGTT TCTGGCTTCA TGTGGTTCGC ATCAATTTTG TGATCATCTA 
AGAATATGTC TCAGTTGTTG TCTTCCCTGA ATTACTCATC TAGCATATGC 
TGTACACTTG GAACCCAGTT TCAATAGGAG CTGGGCTGGG CCATTTGTAC 
TCTCTTACTT TGCATGACTT GTGAGGCGAT GGAATGGAAT TGAATTGCTG 
C

Gene models with high sequence identity

AT3G58660.1 [+] show detail - Ribosomal protein L1p/L10e family
E-value: 8e-47; Score: 185.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Ribosomal protein L1	2.9e-11
HMMPanther	PBK1-RELATED	5e-45
HMMPanther	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	5e-45
superfamily	Ribosomal protein L1	2.3e-41
Coil	coiled-coil	0

See the detailed result >

AT3G58660.1

Model type: Protein coding
Short Description: Ribosomal protein L1p/L10e family
Computational Description: Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42650.1); Has 3644 Blast hits to 2818 proteins in 411 species: Archae - 34; Bacteria - 198; Metazoa - 1370; Fungi - 494; Plants - 482; Viruses - 5; Other Eukaryotes - 1061 (source: NCBI BLink).
Link: InterPro Scan - TAIR