K06934

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06934

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06934

Determination of introduced cDNA(s)

  • J023098B10 - Rice Full-length cDNAs - Original: J023098B10

    full reading [+] show sequence

    Nucleotide sequence: J023098B10 - full reading 
    GCTTTTTCCT CCTCCTAACC ACCGCTCCGG CCTCTCCATC TCCCGCCGCT 
    CGCCGTCGCC GCCGCCGCCC GCCATGTGGA AGCGCGCGAC CTCCGTCCTC 
    CTCCACCACC GCTCCGCCCT CACCCGCCGC TCCCCGGCGA TCGGCGGCGG 
    CGTCCTTCCC CGTGCTCTCT TCTTCTCCAC GCTCGATGCG GCGCAGGCGA 
    GGACGAGGGT GGAGGACGTG ATGCCGATCG CCACCGGGCT CGAGCGCGAG 
    GAGATCGCCG CCGAGCTCCA GGGGAAGAAG AGGTTTGATA TGGACGCGCC 
    CGTCGGGCCC TTTGGTACCA AGGAAGCTCC AGCTGTTATT CAGTCATACT 
    ACAACAAAAG GATTGTTGGT TGTCCCGGTG GTGAAGGAGA GGACGAGCAT 
    GATGTCGTGT GGTTTTGGTT GGAGAAAGGC AAGCCACATG AATGCCCTGT 
    CTGCACTCAG TATTTCTCGC TTGAGGTGAT AGGAGAAGGA GGAGATCCTG 
    ATGGGCATGA CGATGACGAC GATCACCACC ATCATTAAGG TTGCAGAAGT 
    CACCTCTAGC AATAAAAACA CTGGATATGG CCATATCCAT GTCAACTCTC 
    GATTCAGATG ACTTGGAGCA GCAGTGGATT TTGGAAAAAC AAAGTTTGTC 
    TTTTTAGAGA TTTGTTCATG CAAATAACAG GATTCAGTAA ACAATGATAT 
    GCAATTCTCT TTTTCAGCAC ACCTTAGTCG AATTCAAAAT AGGTATGTTT 
    GTTTGTTTGT CTTGATGGAT GATTCCATGT TCAATGGCCA CCTGGACCAT 
    TTATTTTGGT GTATGATCTG TTATCTGAAC ATTTCACAAA CCTTGGTCCT 
    GTTCAATTCA GTTTAAACAA ATGAAGTCAG CATTCTG

    Gene models with high sequence identity

    1. AT3G15640.2 [+] show detail - Rubredoxin-like superfamily protein
      E-value: 1e-41; Score: 167.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Rubredoxin-like 1.3e-32
    BlastProDom Cytochrome c oxidase, subunit Vb 4e-43
    HMMPanther Cytochrome c oxidase, subunit Vb 1.6e-43
    ProfileScan Cytochrome c oxidase, subunit Vb 21.922
    HMMPfam Cytochrome c oxidase, subunit Vb 1.7e-22
    Gene3D Cytochrome c oxidase, subunit Vb 2.1e-29

    See the detailed result >

    AT3G15640.2

    Model type
    Protein coding
    Short Description
    Rubredoxin-like superfamily protein
    Computational Description
    Rubredoxin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit Vb (InterPro:IPR002124); BEST Arabidopsis thaliana protein match is: Rubredoxin-like superfamily protein (TAIR:AT1G80230.1); Has 464 Blast hits to 464 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 230; Fungi - 86; Plants - 102; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR