K06945

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06945

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K06945

Determination of introduced cDNA(s)

  • J033029G06 - Rice Full-length cDNAs - Original: J033029G06

    full reading [+] show sequence

    Nucleotide sequence: J033029G06 - full reading
    GGCCGCCGCC GCCGCCACTC CATCCACTCT GCCACCGCCG CTGCCGCCAC 
    CATCCACTCA CCACCGACAC CGTTCGTGCG ACGCCGCCAC CGTCCACTCC
    GCCGCCGCCA TCGTCCTCTT CCGCCACCAC CGCCATCGTC CCCTTCCGCC
    ACCACCATCC ACTCCTCCAA TAGCTCATCT GCCGCCGCCG CGTCGTTCAG
    CACCGGCGGC GGCGGCCTAC CCTCCCCGTT CCCCGACCTT GGCGCCCCCC
    TCTCCGCCAC GAACACCTCC TTCCCGTCGC TCCAGCGCTC GCTCACCTCG
    GCCGCGGCGA ACAAGATGAA GAAGGCGCTC AGGCTGAGGT CGTTGGCGTC
    GTCCAAGGGT GGAAGCCCTA GGAGCGGCGG CTGCGGTGGG GCGAAGTCGG
    CGCCGCCGCG GTGGCCGGCG ACCGTCGGGG AGTTGACGCG TGTGCAGATG
    CGGATTTCGG AGCCCGCCGC CACCTCAAGC CGCCGTCCCC GAGCCCGACA
    CATTGCTCAA GGACGAGCGG CTCGTGCAGC ACCAGCCGAC GCAGTACCCG
    ACGTCGTAGA GCTGAGCGTC GCCAAGAACA AGTTCAAGGC CTTCGACCTC
    GGCGGCCACC AGATCGCCCG CCTCTGTTCT AATTCTACCG CTCTTTCTTT
    TTTTCCCCCT CTCCTGCTGC AGCTTTTGTG CTACTTGTTG ATGGATTTAT
    GATTTTATTC CTTGAGGGAC GGATGGGGTG ATTTGGGTCG GAAGCAGCTC
    TTGTTTGATT GGAACAAACT AGGGTTTAGG CATGGGGGAC GGATGGGATG
    ATTTGGGTCA GAAGCAGCTC TTGTTTGATT GGAACAAACT AGGTTTAGGC
    ATGGGGGACG GATGGGGTGA TTTGGGTCAG AAGCAGCTCT TGTTTGATTG
    GAACAAACTA GGGTTTAGGC ATGGGGAGTA TTGGGGATTA GACATGCACC
    TGGGTTAATG AAGAATCGGG CATCTTACTC GAATCATGGA AATAAATAAT
    CAGTGCTTTC ATTC

    Gene models with high sequence identity

    1. AT2G25800.1 [+] show detail - Protein of unknown function (DUF810)
      E-value: 0.00000004; Score: 55.80

     

    InterPro Scan Digest

    See the detailed result >

    AT2G25800.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF810)
    Computational Description
    CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Mammalian uncoordinated homology 13, domain 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF810) (TAIR:AT2G20010.2); Has 317 Blast hits to 232 proteins in 40 species: Archae - 0; Bacteria - 8; Metazoa - 29; Fungi - 20; Plants - 175; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR