K06950

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06950

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K06950

Determination of introduced cDNA(s)

  • J033133G01 - Rice Full-length cDNAs - Original: J033133G01

    full reading [+] show sequence

    Nucleotide sequence: J033133G01 - full reading
    GGGATAAGCC CCCCGCGCCC GCACACAACC GCACCGCCAT TTCGCGGTTC 
    CGCCATGGCC ACCGCCGCGG CGCTCGCGCT CCACACGCAG TTCCGGCCGC
    CGCGCTCGCC TCGCCGTCTC CGGCAGCATC TAGCCTTACC CTCAGGAGTC
    CTCATCCGAT CCCCCGTCCG CGCCTCGGCT GCGTCGGCGT CGGCGTCGGC
    GCCGGCGCAG CGGGAGGCCG CCGCCGCGGG AGTCCCGTGG GGCTGCGAGA
    TCGAGTCCCT GGAGAGCGCC GTGTCGCTGG AGAGGTGGCT CACCGATTCG
    GGGCTCCCCG AGCAGAGGTT GGGGATACAG CGGGTGGACG TCGGTGAGCG
    CGGCCTCGTC GCGCTGAAGA ACATCCGCAA GGGGGAGAAG CTGCTCTTCG
    TGCCTCCCTC CCTCGTCATT ACAGCTGACT CAGAATGGGG CTGCCCTGAG
    GTGGGGAATG TGTTGAAGAG AAATTCTGTG CCGGATTGGC CGCTTATTGC
    TACCTACCTT ATAAGCGAAG CTAGTTTAGA GAGTTCGTCG AGGTGGAGCA
    GCTACATAGC GGCGTTGCCA AGGCAGCCTT ACTCTCTGTT GTACTGGACT
    AGGCCTGAGC TTGATGCATA CTTGGTGGCT TCGCCGATCA GGGAACGCGC
    AATTCAGAGG ATCACTGATG TGGTCGGAAC ATACAATGAT CTCCGTGACA
    GAATATTTTC TAAGCATTCA GATTTGTTCC CTGAGGAGGT TTACAACTTA
    GAGACGTTTA GATGGTCCTT CGGCATCCTC TTCTCACGCC TGGTTCGATT
    GCCATCAATG GATGGAAGGG TTGCACTAGT TCCTTGGGCA GATATGCTTA
    ACCATAGTCC TGAGGTGGAA ACATTCTTGG ATTATGATAA ATCCTCAGGG
    GGAATAGTTT TCACTACCGA TCGTTCATAT CAACCAGGTG AGCAGGTGTT
    TATATCCTAT GGCAAGAAAT CCAGTGGCGA GCTATTGCTT TCATATGGTT
    TTGTTCCAAA AGAGGGAACA AACCCAAATG ATTCAGTTGA ATTGCTGGTG
    TCTCTTAATA AGTCTGATAA GTGCTACAAA GAGAAGCTAC AAGCACTAAA
    AAGAAATGGA TTGTCAGAGT TTGAAAGTTT CCCTTTACGC GTCACAGGAT
    GGCCAGTTGA GTTGATGGCT TATGCCTTTC TTGTGGTCAG CCCTCCCGAG
    ATGAGCCAAC GTTTTGAAGA GATGGCTGTC GCTGCATCAA ATAAAAGTCC
    ATCCAAGCCT GGACTTAATT ATCCTGAACT GGAGGAACAA GCTCTTCAGT
    TTATCTTGGA CTGTTGTGAG TCTAACATAG CAAAATACAC AAAGTTCCTA
    GAGGGTAGCA GTGGGTCTCT GCAACTTTCA ACCAATTCAA AGCAAGCCAA
    CCGGACGTTA CTGCTAAAAC AACTAGCAAG AGATCTTTGC ATTAGTGAAC
    GGAGAATCCT GTATCGTACA CAATATATAT TGCGTAGGAG ACTGAGGGAC
    ATGAGAGGTG GTGAACTTAA AGCTCTGTCA TTGTTCAATG GGCTCAGAAA
    GCTCTTCAAA TAAAAGGATG GATTTGTTTT TCAATGTTAG CTGAAGATTT
    CGAGGACAAT GTTTAATCTC TAGTATCTTG CTTCTTCCTT TCAGGTTGTC
    TTTGTTGCTG ATGAAGCTCA GACTGTTGAA GAAAAGGAAA TTGACAAATC
    AGATTACAAT CTCAGCCGAC AAGCAACTGA TGCTAGAAGA CTAGAAGTGG
    TCACAGCTCA ATAGAAGACA CTAGTTGTAA CTTGCGATTG AACAGTCCAT
    ATCTTGGTTT AAATCTACTA TAGCACCATG CAACAATGTA CCAGTGGAGT
    CATCTCGTGT ATATTTTGTT TCAGGGGTTT CCCCTCGATA TCTATAGCAT
    AATATCCCTT CTATTTCTGC TGTTTTCACC CC

    Gene models with high sequence identity

    1. AT3G07670.1 [+] show detail - Rubisco methyltransferase family protein
      E-value: 0; Score: 643.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Rubisco methyltransferase 4.3e-186
    HMMPfam Rubis-subs-bind 2.2e-22
    HMMPfam SET domain 0.00000000000038
    HMMPanther UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 4.5e-73
    superfamily SET domain 1.6e-43
    superfamily RuBisCo LSMT C-terminal, substrate-binding do 3.1e-31
    HMMSmart SET domain 0.0000000000021
    Gene3D no description 3.3e-54

    See the detailed result >

    AT3G07670.1

    Model type
    Protein coding
    Short Description
    Rubisco methyltransferase family protein
    Computational Description
    Rubisco methyltransferase family protein; FUNCTIONS IN: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubisco methyltransferase (InterPro:IPR011192), SET domain (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT5G14260.2); Has 1290 Blast hits to 1288 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 264; Fungi - 357; Plants - 465; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J023086K16 - Rice Full-length cDNAs - Original: J023086K16

    full reading [+] show sequence

    Nucleotide sequence: J023086K16 - full reading
    GGGCGAAGCG GCCGGCGGCT GAGGCGAGAT TCGCGGCGAC CACGTCGGCG 
    AGGAGCGCGA GAGTGGGGGC CCTCCTCCTG TCCGCCGTCC GCATTCTCGT
    CGTGTCTGGT TTGAGCTGCT GCTGCTGCTG CTGCCGGTGG GAGTTGGGCT
    GCTTGCTTGC TTGGTTTGAT TGGTGGAGGT GGGAGGAGTA CTGGAGTAGG
    CGAGTAGCTG TGGGTTGGGG TCGGCGAGGG ATCCGGGCGG CGGGGTATGG
    GGAACGCGAG CGGCAAGGAA GGGGAGGAGA ACGGCCACGT GGCGGCGGGG
    GCCGCCGCCG GAGTGGCTGG CTCGGCGGGG GCAGCGGCCC GGGCTCCGCC
    GCCGCTTATG CCGCCGGACG CCGTGATGCG GGAGCTGCCT CCCCCGGTGC
    CCTACGTCTT CACGCCGCAG GTTCCAGTAG CCCCACTGCA TATACCTACT
    GAATTTTCTC CTGTTTTCAA CAATTCATGG ATAAATGAAT CGGATGAATC
    CACCAATAAC CATCCCCAGG AGAAGGGAAT TCCAACTTTG ATCTCATGGA
    GTCAAGGAGG AAATGAGGTG TTTGTGGAAG GATCATGGGA TAACTGGACA
    TCAAGGAGGG TGTTAGAGAA GTCTGGGAAA GACCATACCA TATTGCTAGT
    TCTGCCATCA GGGGTATACC ATTACAGGAT CATCGTCGAT GGGGAACCGA
    AATATGTCCC TGAACTACCT CATGTGGCTG ATGAGGGAGG GCAGGTTGCC
    AACCTCCTCG ATGTCCATGA TTATATCCCA GAAAGCCTGG GCAGCGTGGC
    AGGATTCGAC TCTCCTCCGT CGCATGAACA CAGCTATGAT CTCCAGCTCC
    CAGGTGATGA GGAGTTTGCC AAGGAGCCAC CTATACTGCC ACCTCAGCTT
    GTAATGTCTG TTCTTGGTGA TACTGATAAC TCTGAAGAAC AAACTCTGAA
    GCCAAAGCAT GTTGTCCTCA ACCACCTGTA TATCGAGAAA GGATGGGGAT
    CGCAGTCGCT GCTTGCTCTT GGAGTCACTC ACCGGTTTCA ATCCAAGTAT
    GTAAGCTTCG TGCTGTACAA GCCGCTGCGA AGGTCATCCA CGGCGAAGCG
    AACAAAGAAT GGTGGTTAAA CTCATGGTAA CTGACAATGT ACATAAGTGA
    AATGCAGGAG GTCTTGTTGT TTGATGCTGA TCAAAGCAAT CAACTTTTTT
    TTTAATTTCT CTCTTTGTTT CTTTAATAAG CTGTTGTTGT AGCATGATGT
    TTTAGAAGCC TGAACTCTAT GAGAAAATGA GTCAAGAGAG GGATGAAAAA
    AAAAGAGAAT ATCCCTCTAT GCTTACCTAA TGTCAGTGTG CAAATTTGTG
    TGGTCTGAGA GTAATGGTGC ATGGAAATTT G

    Gene models with high sequence identity

    1. AT5G21170.1 [+] show detail - 5'-AMP-activated protein kinase beta-2 subunit protein
      E-value: 1e-76; Score: 284.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam 5-AMP-activated protein kinase, beta subunit, interaction domain 9.5e-19
    HMMPanther SNF1-KINASE BETA SUBUNIT, PLANTS 1.1e-117
    HMMPanther 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNI 1.1e-117

    See the detailed result >

    AT5G21170.1

    Model type
    Protein coding
    Short Description
    5'-AMP-activated protein kinase beta-2 subunit protein
    Curator Summary
    Encodes AKINbeta1, a subunit of the SnRK1 kinase (Sucrose non-fermenting-1-related protein kinase). Involved in regulation of nitrogen and sugar metabolism.
    Computational Description
    AKINBETA1; FUNCTIONS IN: AMP-activated protein kinase activity; INVOLVED IN: N-terminal protein myristoylation, cellular response to nitrogen levels; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, interaction domain (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase beta-2 subunit protein (TAIR:AT4G16360.3); Has 697 Blast hits to 689 proteins in 198 species: Archae - 0; Bacteria - 3; Metazoa - 248; Fungi - 167; Plants - 204; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR