K06951

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K06951

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)

Invisible phenotypes

Original: K06951

Determination of introduced cDNA(s)

  • J033090J12 - Rice Full-length cDNAs - Original: J033090J12

    full reading [+] show sequence

    Nucleotide sequence: J033090J12 - full reading 
    GGCCGCTCTC CAAAACCCTA GCTAACCCCT CCTCCTCCAG GTCCCTTCTC 
    CTCGCCGCCC CCCTCTCCCG CGGCGCCACC CCACTGCCCC TCCTGCGGCG 
    CGATGTCTCC GCGGCCTACG GCGACGACGA CATGGACGAC GACTTCGGGG 
    ACTTCGACCT CGACGACGGG GACGGCGTGG GGGACGACGA AGACCTCGAC 
    AACGAGCAGG ACTACGACGT CGACTACGAC CGCCTGCTCG CCCCCGTCAA 
    GGCGCCGCCG CGCCCGCTGT CGGGGGAGGG CGACGAGGAG GAGGAGGGGG 
    ACATCGCCAT GGTCGCCGCC CAGAGCTTCG TCTCCACGCA GGACTCCGCC 
    TCCGACACCG TGGTCGACTA CTCCGTCAAC GAGGACGAAT TCCACAAGAT 
    TCGCCTACTG CACTGCGATT TTTTTATCCG CAAGGTGCCT GACCCCGACG 
    ACGACGTCTT CGACTTCCGG GAGATGTATG TCACGCCGCC TGACACTGAC 
    ATCTATTCCA TCCCAAGGGT TCTTGCTCCG ATGCCGCAAA AGTATTTGAG 
    GTGCACGAAG AAAAATTTTG GTCGTTACCA TGTTAGTGAG CCGCCTGTTG 
    AGCATTTGCG TGATCCCCTA TACAAGACAG AAAGGGAGAT CATGAAGGTT 
    TTCTTAACAA AACATTACAG GAATAGGCGG TGTAACGACC CAGATTTTTT 
    CCTTGATTTT GAAGAGATAT ATGTTATTGA CTCAAAAGCA AGGTCAATCA 
    CGAGAGCAAA AGTTGTGGTT AGTGTCCCTG AAGGAAAGAA GAGGGACAGG 
    AGAAATGACT TGCTACTCAT ACGAGATGGA GGGGAATCAT TCAGAATAAT 
    CGACAAGACC AAAAGGGATG ATGCGACCAC TGTGATCCAA AGAGAGGAGT 
    GGGCAAAGTC GAGGCAAGAT GTGGAGAAGC ACTTTAGGAA GCTCCGCGAC 
    TTTGACTACT CAAATTGGTT CTGAAGAAAT AGTAGCTGGA GTCATTCAGC 
    AGAGAAATTA TTTTGCTAAT TTTGCAGCTG CTTATATTAG AGGAAGCGAC 
    CATGGACCAT GGTGCTCAAG GGAGAATCGC CATCTTCGAG TAGGCTAATT 
    ATGTGTACTT TAGGTTTTTG TAGCAGGTAG AAGGCATGCC ACTTAGCGAG 
    CCTATCTGTA GAAAACTGAA ATGTTTGATG CTTGTGAATG CACTACCTTG 
    TTGAGTAGCC AACGAATATG TGGTCCTTGG ATTCAGAATG CACGTGTTTT 
    TTATAGTATC GGATATCTAT ACTTGGATTC AGAATTTCCT G

    Gene models with high sequence identity

    1. AT1G21600.2 [+] show detail - plastid transcriptionally active 6
      E-value: 2e-80; Score: 296.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G21600.2

    Model type
    Protein coding
    Short Description
    plastid transcriptionally active 6
    Curator Summary
    Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.
    Computational Description
    plastid transcriptionally active 6 (PTAC6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR