K07005

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07005

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07005

Determination of introduced cDNA(s)

  • J033121F18 - Rice Full-length cDNAs - Original: J033121F18

    full reading [+] show sequence

    Nucleotide sequence: J033121F18 - full reading
    CGGAGAAAGC AAAATACTAG CGGCCGCCAA GAAATTCCCC CCCTCTCGCC 
    CTCGCCTTCT CCGAGTTTCC AGCATATGCG CCCCGGATTT TCCTTCAGAT
    TTGCCTAGTT TTTCTCCCTC GCTCTTGACT CGCGATCTCC CGATCTGGAG
    GAGGGCGGTT GCGGCGGTGG TGTCGTTTGC GGATTGGATT CTTTGTCTGA
    TCTCGCGTGG TGAGGATCTT GTCTGTGTGG ATTCGCGGGT TTCTTGGATC
    GGAAAGGGGG AATGCTGGTA TCAATATGCT AGCCCGCGGA GCCGTGCGGT
    CGCTGTTCGA TCGTCTCCGG CCGCCGCCGC ATCACCGGAG GAGGAGGAGT
    AGCCCCGCCG CGATTATGCC GGCCGCCGCC GCCGCCCACC GTGGCTGCTT
    CTGCAGCCTC AGCCACTCGA ATCTGTGCGG GGAGGGCAGT GTGATTCAGA
    GGAAGGGATT TCTTGATCTT GGGATGGGTC GGAGGTTCGC GCCGGGCAGC
    GCATTGGGAT CCAAGGGATG CCTGAATTGG CAGGATCGGG GTAGATCCAA
    GAGGGGGGTG GATGGTGGCG AGGCCGTGAG GATCAAGGCG CAGGTTCTGG
    CGCCGCAGCG GCAGCTGCTC CATGACCCGG AGGTTCTGCC ATTGGAGGAG
    GTTGCCACGA AGAGCTTGAA CGGGAATGGC GCGTGCCGGC GTGGGAAGCC
    GCTGGGTTTC CCCGAGAACG CTGCGCCGAC GAAGATGGTG GTTGCTGTTG
    ATGTGGATGA AGTTCTTGGA AGCTTTCTTG CTGCTCTCAA CAAATTTATT
    GCGGACCGTT ATTCTTTGAA TCACTCAGTA TCAGAATACC ATGTGTATGA
    GTTCTTCAAG ATATGGAATT GTTCTCGAGA AAGAGCTAAT TTTCTTGTCC
    ATGAGTTCTT TACAACCCAT TACTTCCAAG ATGGTATACA TCCTATCCCC
    GGTGCCCGAG ATGCTCTGCA AAATCTCTCT TCTTTCTGTA GCTTATCTGT
    TGTCACATCT CGGCAGGATG CAATTAAAAA TCACACATTA GACTGGATCG
    ACAAGTACTA TCCAGGGTTA TTTGAGCAGA TCCATTTTGG AAACCATTTT
    GCTTTGCAAG GTCAATCAAA GCCAAAATCA GAAATTTGCA GATCTTTTGG
    TGCTCAGGTT TTGGTAGATG ACAACCCCAG ATATGCTTTA GATTGTGCCG
    AGGATGGCAT GAGGGTCCTT CTCTTTGATT ATCACAACTC GTACCCTTGG
    TGCAAAACTG GTGTTGACGA ATCGCATCCG CTGGTGACCA AGGTTCACAA
    TTGGCAAGAA GTTGAGGAAA AGCTTCTTTC TTGGGTAGTA CCAGAGTTCT
    GACACTTGAT TCGGTAGGAG ACGCACCATT TGAGAGCAGC AGATGTCTCG
    GTAGACTTTG ATTTCTGAAG AAACATGTTC AACCCATTCC AGTATGTCAG
    AGTTAAATAG GATCTACAAC ATCCCTAGGC AAAGACTGGC AGAATGAACG
    TTGTTGCAGA ATGAAGGTCT GGAAGGCTCC AGTTTTAGTA TGTCTCCCAT
    GTGATTCAAG ACGAATTTGC AATGTTGACG ACTGAAACCG TCTTCACTCT
    TCAGTTCTTT TACCCTGCTG TGGGGTGTAT ATATTGACAC TGCTATAACC
    TCAATGAATT TGGGGAACGC TTCAT

    Gene models with high sequence identity

    1. AT4G33140.1 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
      E-value: 7e-90; Score: 328.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily HAD-like 6e-12
    HMMPfam NT5C 1.1e-10

    See the detailed result >

    AT4G33140.1

    Model type
    Protein coding
    Short Description
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    Computational Description
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: phosphatase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5'(3')-deoxyribonucleotidase (InterPro:IPR010708); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR