K07005

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07005

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07005

Determination of introduced cDNA(s)

  • J033121F18 - Rice Full-length cDNAs - Original: J033121F18

    full reading [+] show sequence

    Nucleotide sequence: J033121F18 - full reading 
    CGGAGAAAGC AAAATACTAG CGGCCGCCAA GAAATTCCCC CCCTCTCGCC 
    CTCGCCTTCT CCGAGTTTCC AGCATATGCG CCCCGGATTT TCCTTCAGAT 
    TTGCCTAGTT TTTCTCCCTC GCTCTTGACT CGCGATCTCC CGATCTGGAG 
    GAGGGCGGTT GCGGCGGTGG TGTCGTTTGC GGATTGGATT CTTTGTCTGA 
    TCTCGCGTGG TGAGGATCTT GTCTGTGTGG ATTCGCGGGT TTCTTGGATC 
    GGAAAGGGGG AATGCTGGTA TCAATATGCT AGCCCGCGGA GCCGTGCGGT 
    CGCTGTTCGA TCGTCTCCGG CCGCCGCCGC ATCACCGGAG GAGGAGGAGT 
    AGCCCCGCCG CGATTATGCC GGCCGCCGCC GCCGCCCACC GTGGCTGCTT 
    CTGCAGCCTC AGCCACTCGA ATCTGTGCGG GGAGGGCAGT GTGATTCAGA 
    GGAAGGGATT TCTTGATCTT GGGATGGGTC GGAGGTTCGC GCCGGGCAGC 
    GCATTGGGAT CCAAGGGATG CCTGAATTGG CAGGATCGGG GTAGATCCAA 
    GAGGGGGGTG GATGGTGGCG AGGCCGTGAG GATCAAGGCG CAGGTTCTGG 
    CGCCGCAGCG GCAGCTGCTC CATGACCCGG AGGTTCTGCC ATTGGAGGAG 
    GTTGCCACGA AGAGCTTGAA CGGGAATGGC GCGTGCCGGC GTGGGAAGCC 
    GCTGGGTTTC CCCGAGAACG CTGCGCCGAC GAAGATGGTG GTTGCTGTTG 
    ATGTGGATGA AGTTCTTGGA AGCTTTCTTG CTGCTCTCAA CAAATTTATT 
    GCGGACCGTT ATTCTTTGAA TCACTCAGTA TCAGAATACC ATGTGTATGA 
    GTTCTTCAAG ATATGGAATT GTTCTCGAGA AAGAGCTAAT TTTCTTGTCC 
    ATGAGTTCTT TACAACCCAT TACTTCCAAG ATGGTATACA TCCTATCCCC 
    GGTGCCCGAG ATGCTCTGCA AAATCTCTCT TCTTTCTGTA GCTTATCTGT 
    TGTCACATCT CGGCAGGATG CAATTAAAAA TCACACATTA GACTGGATCG 
    ACAAGTACTA TCCAGGGTTA TTTGAGCAGA TCCATTTTGG AAACCATTTT 
    GCTTTGCAAG GTCAATCAAA GCCAAAATCA GAAATTTGCA GATCTTTTGG 
    TGCTCAGGTT TTGGTAGATG ACAACCCCAG ATATGCTTTA GATTGTGCCG 
    AGGATGGCAT GAGGGTCCTT CTCTTTGATT ATCACAACTC GTACCCTTGG 
    TGCAAAACTG GTGTTGACGA ATCGCATCCG CTGGTGACCA AGGTTCACAA 
    TTGGCAAGAA GTTGAGGAAA AGCTTCTTTC TTGGGTAGTA CCAGAGTTCT 
    GACACTTGAT TCGGTAGGAG ACGCACCATT TGAGAGCAGC AGATGTCTCG 
    GTAGACTTTG ATTTCTGAAG AAACATGTTC AACCCATTCC AGTATGTCAG 
    AGTTAAATAG GATCTACAAC ATCCCTAGGC AAAGACTGGC AGAATGAACG 
    TTGTTGCAGA ATGAAGGTCT GGAAGGCTCC AGTTTTAGTA TGTCTCCCAT 
    GTGATTCAAG ACGAATTTGC AATGTTGACG ACTGAAACCG TCTTCACTCT 
    TCAGTTCTTT TACCCTGCTG TGGGGTGTAT ATATTGACAC TGCTATAACC 
    TCAATGAATT TGGGGAACGC TTCAT

    Gene models with high sequence identity

    1. AT4G33140.1 [+] show detail - Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
      E-value: 7e-90; Score: 328.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily HAD-like 6e-12
    HMMPfam NT5C 1.1e-10

    See the detailed result >

    AT4G33140.1

    Model type
    Protein coding
    Short Description
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
    Computational Description
    Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: phosphatase activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5'(3')-deoxyribonucleotidase (InterPro:IPR010708); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR