K07007

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07007

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07007

Determination of introduced cDNA(s)

  • J033138N02 - Rice Full-length cDNAs - Original: J033138N02

    full reading [+] show sequence

    Nucleotide sequence: J033138N02 - full reading
    GTGGGCCACA GCCGCTGACA ACGCGGGCCC ACACGATCCC CCCTCTCCCC 
    TGTCTTAAAC CCCACACAAA CACGACCCAA CGCCTTCCTC TCCTCCTCTC
    TCTCTCCCCC GCTCCTCGCG CCGCCGACAT CGCCGGAGAA AATGAGTCAA
    CAAGGGGAGT ACCACGCCGA CATGATGGCG GAGTTCCTGC GGGGGAGCGG
    CGGCGCGGCC GTGATTGACG GCGGGCTGGC GACGGAGCTG GAGGCTAACG
    GCGCCGACCT CAAGGACGCC CTCTGGAGCG CCCGGTGCCT CTTCACCTGC
    CCCGACCTCA TCCGGAAGGT TCATTTGGAC TATCTTGAAG CTGGGGCAAG
    TGTTCTGATA ACAGGATCAT ATCAGGCCAC AATTCAGGGC TTCCTTTCAA
    AGGGATTTTC TCAGGAGGAA AGTGAATCAT TCCTGAGGAG GAGTGTTGAA
    CTAGCATGTG AAGCACGGGC TATTTACCTG GAAAAATGTT CTAACGGTTC
    GGACGAAGCC AAAGACGTAA CAAAATACAG GAAGCGCCCA ATACTAATTG
    CGGCATCAGT TGGTTCTTAT GGAGCATACC TAGCAGATGG CTCTGAGTAT
    AGTGGTGACT ACGGTAATGA GGGCACTTTG GAGTTCCTCA AAAACTTTCA
    TCTGAGAAGG CTTCAAGTCC TTGCTGAAGC TGGTCCTGAT GTTATTGTTT
    TTGAAACTAT TCCAAACAAA ATTGAGACTC AGGCATATGT TGAACTACTA
    GAGGAGTGTA AATTACGTAT TCCGGCATGG TTTGGTTTCA CTTCAAAGGA
    TGGAGTCAAT GTAGTAAGTG GTGATTCCCT GATAGAGTGT GCCTCTATTG
    CCGATTCATG CAAGGAAGTT GCTGCAGTTG GTATTAATTG CACTCCCCCA
    AGATTTATCC ATGAATTAGT TTTATCCATC CGGAAGGTGA CAAGTAAACC
    AATATTAATA TACCCAAATA GTGGTGAGAG CTATGATCCT ATAAGAAAGG
    AATGGGTGGA ATGCTCAGGG ATTTCAAATG AGGATTTTGT TTCATATGTC
    AAAAAATGGC ATGAGGCTGG GGCCTCACTG ATAGGGGGTT GCTGCAGAAC
    AAGTCCAGAT ACGATAAGAG GAATATCGAA GGCTCTGCAT GGAGTTTAGT
    TGATGGAGAT TGAGTAGAGT TGATAGCCAG TTTTTGGACA GAGTCGCTAA
    CTCACTCTGT TTGCCCGATG TGACACAGGT CTTATTGGTC AGGTAGTCAG
    ATTTCTTATG GAATTTGAAT AGCTATTGAG GACAATGATT TAGGAAAAAA
    AAAAAACTAA TGCTGTGTTG TTCTTTCATT AGCTTGTACC AGCACCTTTA
    TTGATGAGGA AATGATGCCA AATGTTGGCC T

    Gene models with high sequence identity

    1. AT3G63250.1 [+] show detail - homocysteine methyltransferase 2
      E-value: 4e-125; Score: 445.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Homocysteine S-methyltransferase 44.954
    Gene3D Homocysteine S-methyltransferase 1.7e-76
    superfamily Homocysteine S-methyltransferase 2.2e-82
    HMMPfam Homocysteine S-methyltransferase 2.8e-83
    HMMPanther HOMOCYSTEINE S-METHYLTRANSFERASE 5e-41
    HMMPanther METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRA 5e-41

    See the detailed result >

    AT3G63250.1

    Model type
    Protein coding
    Short Description
    homocysteine methyltransferase 2
    Curator Summary
    Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.
    Computational Description
    homocysteine methyltransferase 2 (HMT2); CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1); Has 6768 Blast hits to 6760 proteins in 1892 species: Archae - 4; Bacteria - 4264; Metazoa - 340; Fungi - 135; Plants - 163; Viruses - 0; Other Eukaryotes - 1862 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR