K07012

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07012

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K07012

Determination of introduced cDNA(s)

  • J013031L04 - Rice Full-length cDNAs - Original: J013031L04

    full reading [+] show sequence

    Nucleotide sequence: J013031L04 - full reading 
    TTGGGTGAGA TCGAGCTGAA AAAAAAAAGA GAGGCCACGA AGAGAGCTCA 
    GCTGCTGCCT CTAGCTTACT TGGTGATAAG GAGGAGGAGG AGGAGGAGGG 
    CACCGACATG GCCGCAGCCA CGGCGTACAC CGTGGCGCTC CTCGGCGCCA 
    CCGGCGCGCG CGTCCCCGCC GCTCCACGCT CCGCCGCGCT TCTGCCGCGC 
    CGCGGCGGCG TGCTCCAACC GCTGCGCCTC CAGGACGCGC CGCGACTGTC 
    CCTGCTCCGC GTCAGGGCCG CCTCCGACGA CACCTCCACC TCGGCCAGCG 
    GCGACGAGCT CGTCGCCGAC CTCAAGGCAA AGTGGGAGGC GATCGAGGAC 
    AAGCCGACGT TCCTCCTCTA CAGCGGCGGC GCCGTCGTCG CCCTCTGGCT 
    CACCACCGTC GTCGTCGGCG CCATCAACTC CGTGCCGCTG CTCCCCAAGA 
    TCCTGGAGCT CGTCGGCCTC GGCTACACCG GCTGGTTCGT CTACCGCTAC 
    CTCCTCTTCA AGGAGAGCAG GAAAGAGTTG GCGACCGACA TCGAGACCTT 
    GAAGAAGAAG ATCGCTGGAA CGGAGTAATT AAGCAGCTGC ATTTGTCCGG 
    GGAAGTTTTG GGGGGTGACT CTCTAGAGTG CTTGCTGCTG CTTCCTCTGT 
    GTGATGTTTG TATATCTCTA CGAGAATATG TTCTGCTCCC ATGTGCAGTA 
    ACAGCGTAGT GCAAAAACTG TATCAAACCT ACTATCAGTT GTTTCTTCGA 
    AATTCAAAAC AATTTCTTCG CTTTCTTGTT GCGTGGAAGT GTTCATATAA 
    TCTGGCGTAT GACAATGAGA ATATATATCT CGGAGAATGG TTGATCGACT 
    CATT

    Gene models with high sequence identity

    1. AT4G01150.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 2e-28; Score: 122.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G01150.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J023006E09 - Rice Full-length cDNAs - Original: J023006E09

    full reading [+] show sequence

    Nucleotide sequence: J023006E09 - full reading 
    GGCCTGATCC ATCGGAGGAG GACGACGAGG AGGAGGTTTG CGAGGCAGCG 
    GCAGGGAGAG GAAGATGTCT TCGCTGCGGA ACGCGATCCA GCGGCGCGCT 
    CACAAGGAGC GCGCCCAGCC GGAGTCGAGG AAGAAGTTCG GGCTTCTGGA 
    GAAGCACAAG GACTACATCG TTCGGGCGAA GGCTTTCCAC CAGAAGGAGG 
    AAACCATCAG GAAATTGAAG GAGAAGGCAT CATTTAGAAA CCCTGATGAG 
    TTCTATTTTA AGATGATCAA CAGCAAGACT GTTGATGGAA TTCATAGGCC 
    TAAGCCTGAA GCAAACAAGT ATACTGAAGA TGAACTCATG CTGCTAAAAA 
    CTAAAGATAT GGGATACATC CTTCAGGGTA TTCAGAGTGA AAAGAAGAAA 
    ATTGAAAAAT TAAGCTCCAT GCTTCATGAA CTAGACAACA AGCGACCAAA 
    CAAGCATGTT TACTTTGCTG AAGACAGAGA AGAGGTCAAA GAAATACAAT 
    CTAGAATAGA ACAAAAGAGC AGTTCACTTG GTTTGGACAA CATCCCTTCC 
    CGTATAAAGA GGAAAACTGC TTCGTCCTAT AGGGAGTTAG AGGAGAGGAA 
    ACAGAGGGTT CAAAAGCTTG AGAAACTGTA TGCAGACATG GCCTTGCAGA 
    AAGAGTTGAA GAAACCTGGA CGGAAAAGAA AACTCCGTGA GGATGAGATT 
    GAGAATCAAA CATCCCGGCC TGTTTATAAG TGGCGAGCAC AACGGAAGCG 
    ATGATGTGAA TGGCTTACAA TGGAATCATT GAGAATATAT GGAGTAACCA 
    GTAGATCCTA AAGCAAACGG AGACTATTGT TTATTTTCTT GAATTCTGAT 
    GCATTTACAT GTAGCAGTGC CCCTCCACAA CCGTCTCTCT TCATAGCCTT 
    CACTTGATTG TATTTGTGGA TCCATGTTGG ATACCACTTT CTGCTACCTG 
    CTACTGATGT GATGTACCTC TGCTTTTTAC AAAATGTTGG GTAACTACAT 
    CAACAATTGA GAACCTAAAC GGTCCGAATC TTCACGCATC GTCCGTAATC 
    AACATTCCAA GGTTAGCAAG CACAGTGCCA CCAGAATTAG GGCGTGTTCA 
    CTTTGCCGGA AAAAAAACAT ACCATTTGAT GGTAGAGCCA AATATTAGTA 
    ATGCCATTCT TTGGTAAAGT CAAAATATCA ATGTGTCATT GGCTTTGATA 
    CCTTACTAAA TTTTGGTGTA ATTTTTGTGA GTGGAAGGTT CCGGAATTAC 
    CAAATTACCT TACTAAATTT TGGTGTAATT TTTGTGAGTG CAATCCTATT 
    TGTTTGTTAC CCTACCAACA AAAATTTGAC AATACCAAAA TTTAGTAAGG 
    TTTATTCTGG TAGTGGAGTG AACAAGCCAC TCTTTAGTGT ATGAAGTATT 
    TGATATATTC TCCAGAAAAA AAGGGGTTAT GCACAGC

    Gene models with high sequence identity

    1. AT3G60360.1 [+] show detail - embryo sac development arrest 14
      E-value: 5e-77; Score: 285.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Small-subunit processome, Utp11 3.3e-83
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther Small-subunit processome, Utp11 1.1e-75
    HMMPfam Small-subunit processome, Utp11 1.3e-61

    See the detailed result >

    AT3G60360.1

    Model type
    Protein coding
    Short Description
    embryo sac development arrest 14
    Computational Description
    EMBRYO SAC DEVELOPMENT ARREST 14 (EDA14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: small-subunit processome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp11 (InterPro:IPR007144); Has 434 Blast hits to 428 proteins in 209 species: Archae - 4; Bacteria - 1; Metazoa - 127; Fungi - 141; Plants - 59; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR