K07013

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07013

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
rosette leaf (PO:0000014)
  • upturned (PATO:0002031)
    (Rosette leaf::Shape::hyponastic)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • present in greater numbers in organism (PATO:0000470)
    (Stem::Number::many)
T2  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07013

Determination of introduced cDNA(s)

  • J013134A03 - Rice Full-length cDNAs - Original: J013134A03

    full reading [+] show sequence

    Nucleotide sequence: J013134A03 - full reading
    GAGGGCTTTG CTCTGGTCTT GCAAGTTAGG TTAGTGATTA GTAGCAGCAG 
    AAAGAGTGGA AGATTTAGAG GATAAGGGAT AGTTTGGTCA TGTCGGATAC
    AGCCTTGTCG GGCGCGCCGC CGGCGGCGAG GTCGGAGGAT TCGTGGAGTC
    AGCAGCAGAG CTACAACTTC AGCGGGCGCG TGCTGCTCAC GGCCGTCGTG
    ATCCTGTTCG TGATCGCCGT CGTCTTCGCC GTCACCCGCG TCTTGCTGTA
    CTACCTCGTG GTGCGGCCCG GCGGTGGCGG CGGAGGCCGT CGTCGTGGCG
    GCCTGGCAGG GGGGATCTTG CGGTCGTTGA ACTCGCTCGG CGTGAGCGGT
    CGCCGCGGGC TGGACGCGTC CGCGCTCGCC GCGCTGCCGG TCACCGCGTA
    CCGGAAGAAC GGCGGCGGGG GCGGTGGTGG GGAGGGCTCC AACCGCGGCG
    GGCCTGGCGC CACCGCCGCC GACTGCGCCG TGTGTCTGTC GGAGCTCGCC
    GACGGCGAGA AGGTGCGGGA GCTGCCCAAC TGCCGGCACG TCTTCCACGT
    GGAGTGCGTC GACGCGTGGC TGCGCTCCAG GACCACGTGC CCGCTCTGCC
    GGGCCGAGGC GGAAGTACCC AAGGCGAGGG CTTCGGCGGC GGCGACGGCG
    ACGGCGCAGT CGTCGTCGTC GCTCGGTGAC GGAGGAATTA CCGTGGTCGT
    GACCATACAC GGCGGCTCTG ACGAAGCCGG TGGCAGGTCA ACGGCGTTGA
    CTGGTCAACC GGGATCCTCG AACTCTCCTA GCTGCGAGGC TGCAAGGAAT
    TGAGGATCGA CGATGACGAC GAACTTCAGA GTTGTGATGT GATTCTTTAT
    TTTGCTATAG GAGCTCTATC AAGTGTAGAT TGTGAAACGC ATTTGTGATG
    TGATTCTTTA TTTCTTTCCC ATATATAGCT AAGAAACAAC TGCATAATAC
    ATTCCCCGC

    Gene models with high sequence identity

    1. AT2G42360.1 [+] show detail - RING/U-box superfamily protein
      E-value: 3e-16; Score: 82.80

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C3HC4 RING-type 1.3e-07
    ProfileScan Zinc finger, RING-type 12.725
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 1.9e-16
    HMMSmart Zinc finger, RING-CH-type 0.0077
    HMMSmart Zinc finger, RING-type 5.3e-07
    Gene3D no description 8.4e-15
    superfamily RING/U-box 2.2e-16

    See the detailed result >

    AT2G42360.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42350.1); Has 8862 Blast hits to 8837 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 2202; Fungi - 673; Plants - 4781; Viruses - 60; Other Eukaryotes - 1146 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR
  • J023006E09 - Rice Full-length cDNAs - Original: J023006E09

    full reading [+] show sequence

    Nucleotide sequence: J023006E09 - full reading
    GGCCTGATCC ATCGGAGGAG GACGACGAGG AGGAGGTTTG CGAGGCAGCG 
    GCAGGGAGAG GAAGATGTCT TCGCTGCGGA ACGCGATCCA GCGGCGCGCT
    CACAAGGAGC GCGCCCAGCC GGAGTCGAGG AAGAAGTTCG GGCTTCTGGA
    GAAGCACAAG GACTACATCG TTCGGGCGAA GGCTTTCCAC CAGAAGGAGG
    AAACCATCAG GAAATTGAAG GAGAAGGCAT CATTTAGAAA CCCTGATGAG
    TTCTATTTTA AGATGATCAA CAGCAAGACT GTTGATGGAA TTCATAGGCC
    TAAGCCTGAA GCAAACAAGT ATACTGAAGA TGAACTCATG CTGCTAAAAA
    CTAAAGATAT GGGATACATC CTTCAGGGTA TTCAGAGTGA AAAGAAGAAA
    ATTGAAAAAT TAAGCTCCAT GCTTCATGAA CTAGACAACA AGCGACCAAA
    CAAGCATGTT TACTTTGCTG AAGACAGAGA AGAGGTCAAA GAAATACAAT
    CTAGAATAGA ACAAAAGAGC AGTTCACTTG GTTTGGACAA CATCCCTTCC
    CGTATAAAGA GGAAAACTGC TTCGTCCTAT AGGGAGTTAG AGGAGAGGAA
    ACAGAGGGTT CAAAAGCTTG AGAAACTGTA TGCAGACATG GCCTTGCAGA
    AAGAGTTGAA GAAACCTGGA CGGAAAAGAA AACTCCGTGA GGATGAGATT
    GAGAATCAAA CATCCCGGCC TGTTTATAAG TGGCGAGCAC AACGGAAGCG
    ATGATGTGAA TGGCTTACAA TGGAATCATT GAGAATATAT GGAGTAACCA
    GTAGATCCTA AAGCAAACGG AGACTATTGT TTATTTTCTT GAATTCTGAT
    GCATTTACAT GTAGCAGTGC CCCTCCACAA CCGTCTCTCT TCATAGCCTT
    CACTTGATTG TATTTGTGGA TCCATGTTGG ATACCACTTT CTGCTACCTG
    CTACTGATGT GATGTACCTC TGCTTTTTAC AAAATGTTGG GTAACTACAT
    CAACAATTGA GAACCTAAAC GGTCCGAATC TTCACGCATC GTCCGTAATC
    AACATTCCAA GGTTAGCAAG CACAGTGCCA CCAGAATTAG GGCGTGTTCA
    CTTTGCCGGA AAAAAAACAT ACCATTTGAT GGTAGAGCCA AATATTAGTA
    ATGCCATTCT TTGGTAAAGT CAAAATATCA ATGTGTCATT GGCTTTGATA
    CCTTACTAAA TTTTGGTGTA ATTTTTGTGA GTGGAAGGTT CCGGAATTAC
    CAAATTACCT TACTAAATTT TGGTGTAATT TTTGTGAGTG CAATCCTATT
    TGTTTGTTAC CCTACCAACA AAAATTTGAC AATACCAAAA TTTAGTAAGG
    TTTATTCTGG TAGTGGAGTG AACAAGCCAC TCTTTAGTGT ATGAAGTATT
    TGATATATTC TCCAGAAAAA AAGGGGTTAT GCACAGC

    Gene models with high sequence identity

    1. AT3G60360.1 [+] show detail - embryo sac development arrest 14
      E-value: 5e-77; Score: 285.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Small-subunit processome, Utp11 3.3e-83
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther Small-subunit processome, Utp11 1.1e-75
    HMMPfam Small-subunit processome, Utp11 1.3e-61

    See the detailed result >

    AT3G60360.1

    Model type
    Protein coding
    Short Description
    embryo sac development arrest 14
    Computational Description
    EMBRYO SAC DEVELOPMENT ARREST 14 (EDA14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: small-subunit processome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp11 (InterPro:IPR007144); Has 434 Blast hits to 428 proteins in 209 species: Archae - 4; Bacteria - 1; Metazoa - 127; Fungi - 141; Plants - 59; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR