K07013

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	hyponastic (PATO:0002329) (Cauline leaf::Shape::hyponastic)
	rosette leaf (PO:0000014)	upturned (PATO:0002031) (Rosette leaf::Shape::hyponastic) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few)
	stem (PO:0009047)	present in greater numbers in organism (PATO:0000470) (Stem::Number::many)
T2
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	fruit (PO:0009001)	abnormal (PATO:0000460) (Silique::Others)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick) decreased thickness (PATO:0000592) (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07013

Determination of introduced cDNA(s)

J013134A03 - Rice Full-length cDNAs - Original: J013134A03

full reading [+] show sequence

GAGGGCTTTG CTCTGGTCTT GCAAGTTAGG TTAGTGATTA GTAGCAGCAG 
AAAGAGTGGA AGATTTAGAG GATAAGGGAT AGTTTGGTCA TGTCGGATAC 
AGCCTTGTCG GGCGCGCCGC CGGCGGCGAG GTCGGAGGAT TCGTGGAGTC 
AGCAGCAGAG CTACAACTTC AGCGGGCGCG TGCTGCTCAC GGCCGTCGTG 
ATCCTGTTCG TGATCGCCGT CGTCTTCGCC GTCACCCGCG TCTTGCTGTA 
CTACCTCGTG GTGCGGCCCG GCGGTGGCGG CGGAGGCCGT CGTCGTGGCG 
GCCTGGCAGG GGGGATCTTG CGGTCGTTGA ACTCGCTCGG CGTGAGCGGT 
CGCCGCGGGC TGGACGCGTC CGCGCTCGCC GCGCTGCCGG TCACCGCGTA 
CCGGAAGAAC GGCGGCGGGG GCGGTGGTGG GGAGGGCTCC AACCGCGGCG 
GGCCTGGCGC CACCGCCGCC GACTGCGCCG TGTGTCTGTC GGAGCTCGCC 
GACGGCGAGA AGGTGCGGGA GCTGCCCAAC TGCCGGCACG TCTTCCACGT 
GGAGTGCGTC GACGCGTGGC TGCGCTCCAG GACCACGTGC CCGCTCTGCC 
GGGCCGAGGC GGAAGTACCC AAGGCGAGGG CTTCGGCGGC GGCGACGGCG 
ACGGCGCAGT CGTCGTCGTC GCTCGGTGAC GGAGGAATTA CCGTGGTCGT 
GACCATACAC GGCGGCTCTG ACGAAGCCGG TGGCAGGTCA ACGGCGTTGA 
CTGGTCAACC GGGATCCTCG AACTCTCCTA GCTGCGAGGC TGCAAGGAAT 
TGAGGATCGA CGATGACGAC GAACTTCAGA GTTGTGATGT GATTCTTTAT 
TTTGCTATAG GAGCTCTATC AAGTGTAGAT TGTGAAACGC ATTTGTGATG 
TGATTCTTTA TTTCTTTCCC ATATATAGCT AAGAAACAAC TGCATAATAC 
ATTCCCCGC

Gene models with high sequence identity

AT2G42360.1 [+] show detail - RING/U-box superfamily protein
E-value: 3e-16; Score: 82.80

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Zinc finger, C3HC4 RING-type	0.00000013
ProfileScan	Zinc finger, RING-type	12.725
HMMPanther	RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D	1.9e-16
HMMSmart	Zinc finger, RING-CH-type	0.0077
HMMSmart	Zinc finger, RING-type	0.00000053
Gene3D	no description	0.0000000000000084
superfamily	RING/U-box	2.2e-16

See the detailed result >

AT2G42360.1

Model type: Protein coding
Short Description: RING/U-box superfamily protein
Computational Description: RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G42350.1); Has 8862 Blast hits to 8837 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 2202; Fungi - 673; Plants - 4781; Viruses - 60; Other Eukaryotes - 1146 (source: NCBI BLink).
Link: InterPro Scan - TAIR

J023006E09 - Rice Full-length cDNAs - Original: J023006E09

full reading [+] show sequence

GGCCTGATCC ATCGGAGGAG GACGACGAGG AGGAGGTTTG CGAGGCAGCG 
GCAGGGAGAG GAAGATGTCT TCGCTGCGGA ACGCGATCCA GCGGCGCGCT 
CACAAGGAGC GCGCCCAGCC GGAGTCGAGG AAGAAGTTCG GGCTTCTGGA 
GAAGCACAAG GACTACATCG TTCGGGCGAA GGCTTTCCAC CAGAAGGAGG 
AAACCATCAG GAAATTGAAG GAGAAGGCAT CATTTAGAAA CCCTGATGAG 
TTCTATTTTA AGATGATCAA CAGCAAGACT GTTGATGGAA TTCATAGGCC 
TAAGCCTGAA GCAAACAAGT ATACTGAAGA TGAACTCATG CTGCTAAAAA 
CTAAAGATAT GGGATACATC CTTCAGGGTA TTCAGAGTGA AAAGAAGAAA 
ATTGAAAAAT TAAGCTCCAT GCTTCATGAA CTAGACAACA AGCGACCAAA 
CAAGCATGTT TACTTTGCTG AAGACAGAGA AGAGGTCAAA GAAATACAAT 
CTAGAATAGA ACAAAAGAGC AGTTCACTTG GTTTGGACAA CATCCCTTCC 
CGTATAAAGA GGAAAACTGC TTCGTCCTAT AGGGAGTTAG AGGAGAGGAA 
ACAGAGGGTT CAAAAGCTTG AGAAACTGTA TGCAGACATG GCCTTGCAGA 
AAGAGTTGAA GAAACCTGGA CGGAAAAGAA AACTCCGTGA GGATGAGATT 
GAGAATCAAA CATCCCGGCC TGTTTATAAG TGGCGAGCAC AACGGAAGCG 
ATGATGTGAA TGGCTTACAA TGGAATCATT GAGAATATAT GGAGTAACCA 
GTAGATCCTA AAGCAAACGG AGACTATTGT TTATTTTCTT GAATTCTGAT 
GCATTTACAT GTAGCAGTGC CCCTCCACAA CCGTCTCTCT TCATAGCCTT 
CACTTGATTG TATTTGTGGA TCCATGTTGG ATACCACTTT CTGCTACCTG 
CTACTGATGT GATGTACCTC TGCTTTTTAC AAAATGTTGG GTAACTACAT 
CAACAATTGA GAACCTAAAC GGTCCGAATC TTCACGCATC GTCCGTAATC 
AACATTCCAA GGTTAGCAAG CACAGTGCCA CCAGAATTAG GGCGTGTTCA 
CTTTGCCGGA AAAAAAACAT ACCATTTGAT GGTAGAGCCA AATATTAGTA 
ATGCCATTCT TTGGTAAAGT CAAAATATCA ATGTGTCATT GGCTTTGATA 
CCTTACTAAA TTTTGGTGTA ATTTTTGTGA GTGGAAGGTT CCGGAATTAC 
CAAATTACCT TACTAAATTT TGGTGTAATT TTTGTGAGTG CAATCCTATT 
TGTTTGTTAC CCTACCAACA AAAATTTGAC AATACCAAAA TTTAGTAAGG 
TTTATTCTGG TAGTGGAGTG AACAAGCCAC TCTTTAGTGT ATGAAGTATT 
TGATATATTC TCCAGAAAAA AAGGGGTTAT GCACAGC

Gene models with high sequence identity

AT3G60360.1 [+] show detail - embryo sac development arrest 14
E-value: 5e-77; Score: 285.00

InterPro Scan Digest

Program	Description	E-value
HMMPIR	Small-subunit processome, Utp11	3.3e-83
Coil	coiled-coil	0
Coil	coiled-coil	0
HMMPanther	Small-subunit processome, Utp11	1.1e-75
HMMPfam	Small-subunit processome, Utp11	1.3e-61

See the detailed result >

AT3G60360.1

Model type: Protein coding
Short Description: embryo sac development arrest 14
Computational Description: EMBRYO SAC DEVELOPMENT ARREST 14 (EDA14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: small-subunit processome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp11 (InterPro:IPR007144); Has 434 Blast hits to 428 proteins in 209 species: Archae - 4; Bacteria - 1; Metazoa - 127; Fungi - 141; Plants - 59; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).
Link: InterPro Scan - TAIR