K07014

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07014

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07014

Determination of introduced cDNA(s)

  • J023082N05 - Rice Full-length cDNAs - Original: J023082N05

    full reading [+] show sequence

    Nucleotide sequence: J023082N05 - full reading 
    GTGCAGCGGC GTCTGTTGCC GGTATTAGGA AGCCAACGTT GAGACGTCTT 
    CCTTCGGTCC CAATCTCACA CACCATGACA GGAAAGAGAT CGACCTCGAC 
    CTCGACCTCG ACCTCGACCT CGAGTAAGCG AGGATGCAGT GCTACTCGTA 
    CGGCGACGGC GGGGTCAATC GCCGGTGTAG ATCACAATAC GTACCATTGT 
    CTAATAGTCT TAGTTCTGTT TGAGACGCCC TCTGGCTTCG CAATGTTCGG 
    TATGAGTGGG GACAGACTCA TTCAACCAAA TGCCCTGCAG GAAATCTGGG 
    CAAACTTTGG CGTGGACTAT AGGGTATCCA AATTCATTTG GCTGAAGGAA 
    TTTCGAGAAA TCAAGGACAA GTCCAGTGCC ATTAATCATG ATACTGGTGT 
    CAGTTGCGAC CTTGCTGAGA TGATCATGAA GTGGCATCAC CCTGGGCAGA 
    AAATGGCCGT TGGAAAACCC GAATATAAAG AAATCATTGA AAGAAGCTTG 
    AGTGTGCCCT GCATGTTTGA TGAAATTGTG ATGGAAGTGA TGTGGGGCCT 
    GAAGAATCTG ATGCATGTTT TAGTACCCCA AGAAAAAATG AAGTTGAGCA 
    AGGACGACTA CCTCCCAATG AGCCAAGGAT TGTACATGCT CCTTAACCGC 
    TATGGTTTGG ATGTCAAACC AGAGATGGTT ACTGACTCTA TTATTAAGCT 
    GGCATGCTTC TTGCTTGATT GCGAATACTG TGATGTGAAA AACTCCAAGC 
    ACTTGCGCTG GACTGGTGAA TACATTGAGA AACGGTCTGG CATTAAATGT 
    TTAGACTGGG ATTTGATGAA ACTTGCTACG GGTATTAAGA TCATATGTTA 
    CCCCACAGAA AGATCTACAG CTGAGGAAGC GATGTTTACA CAAGATGAGC 
    TGTCGAAGTT AGTGAAGGAT GCACATAAGT ATGAAGGGAA GATCCGTAAG 
    AGATCTTTCA TGAATGCCTA CAGCGAGATG GTTGAAGCCC GTCAACTTAT 
    TCCTATGGCA CAAAAACAAC TGGAGGACTT GGTAAAGGAG GCCAAAGATG 
    CATGTGAAGC TGAACAAAGC ACATGAACGC AATAAGCCAG TCAGTAGCAT 
    GAGAGAAGAA CACAGTCGCA TGAGAGAAGA ACTCAGTCGC CAAGAATATC 
    ACATTTCCTT AAGGGAGAAC TGGGTTTGAA ATCCTATCCT GGACACTGGA 
    TGGTGAGGCT GCCTGAAGCT GCCATCCTGG ACCAAAGCGT TGCATTCGTG 
    TGTTTTTCTC TGTTTAATTA TCGACAATGG GAACTCACTA GTAATTCGAC 
    CAGCGTTATC TACTCTTGAT TGCTTTTGAT GTTTCTTTTC CTATCAAATA 
    GTTAAACTTC AGGTTCTCG

    Gene models with high sequence identity

    1. AT3G05060.1 [+] show detail - NOP56-like pre RNA processing ribonucleoprotein
      E-value: 0.00000001; Score: 58.50

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam NOP5, N-terminal 0.0000039
    Coil coiled-coil 0
    HMMPanther NUCLEOLAR PROTEIN NOP56 0.00000000064

    See the detailed result >

    AT3G05060.1

    Model type
    Protein coding
    Short Description
    NOP56-like pre RNA processing ribonucleoprotein
    Curator Summary
    SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein
    Computational Description
    NOP56-like pre RNA processing ribonucleoprotein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: NOP56-like pre RNA processing ribonucleoprotein (TAIR:AT5G27120.1); Has 39712 Blast hits to 18529 proteins in 1244 species: Archae - 275; Bacteria - 3520; Metazoa - 14574; Fungi - 4183; Plants - 1688; Viruses - 262; Other Eukaryotes - 15210 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR