K07037

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07037

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07037

Determination of introduced cDNA(s)

  • J023139M11 - Rice Full-length cDNAs - Original: J023139M11

    full reading [+] show sequence

    Nucleotide sequence: J023139M11 - full reading
    GGTGGTTGGC AAATCAATCG AATCGATCCC CTCTCATCCG CTCGCGGACA 
    CAGAATCTCT CCTCTCCCTC TCGGCGCCCA GGTTCTCGCC GCCGCCCGCC
    CCTTCCTTCT CTTCTCCTCC TACGTACGTA AATAATCCAC CTACGATAGA
    TACGACCAAC CCCATTATGA GCTCTCTATG CCCCTTTGCC AAACTCGCCT
    CCGCTGGCGC CACATGCCCC GTAAAATCAT CATCAGACAA CAAAACCACC
    ATCAATCACA CCGACGACGA CGACGACGAC AATGAAAAAA CTGGCAATGC
    TAACACCGAT CCTCGTGTGG TGCCACCAAA GTGCCCCTTT GGCTATGACT
    CCAACACCTT CAAGCTTGGC CCACTCAGCT GCATGGTCTG CCACGCTCTG
    CTACATCAAA GCAGCAAATG CACCCCGTGC TCCCACAAGT TCTGCAAGGC
    ATGCATATTG CGCTTTAAGG ACTGTCCATT GTGTGGTGCT GACATCCAAG
    GGATCGAGCC CGATGATGAG CTTCAAGGCC TTGTCGACCG CTTCATTGAT
    GGCCATGCCC GAATCAAGAG ATCACATGCT GCAGGCGATG GGGAAGCCGC
    AAGTGACAAC AAGACCAAGG TCATTTACGA GGATGTCTCC ATGGAGAGAG
    GGGCTTTTCT GGTCCAGCAA GCGATGAGGG CCTTTCGCGC ACAGAACATT
    GAAAGTGCAA AGTCAAGGCT CAGTATGTGT GCACAAGACA TCAGGGAAGA
    ATTGAAATCT AAACAAGACA ACCAAGAACT GTGTTCTCAA CTTGGAGCTG
    TGTTAGGAAT GCTTGGGGAC TGCTGTCGGA CCTTGGGAGA TGCTCCTTCA
    GCAATCACTT ACTATGAAGA AAGTGCTGAA TTCCTCTCGA AATTGCCCAA
    AAAAGATCTG GAGTTGGTCC ATACTCTCTC AGTTTCACTA AATAAAATTG
    GAGATCTTCG CTATTATGAT GGGGACCTCC ACTCAGCAAG AAGCTATTAT
    GCGCGTTCGT TGGATGTTCT CAGAAGTGCA GCAAAAGAAC ACTCAGCTGT
    GGCTTCCCAG GTCATTGATG TAGCAACTTC TCTTGCCAAA GTTGCGGATG
    TCGATAGAAA TCTTGGGAAC GAAAGCATGG CAGTTGAGGG TTTTGAGGAA
    GCAATTAAAT GCCTTGAGAA TTTGAAGCTG GAATCTGGAG AGGCCAGTCT
    TGAGCAGCGG CGTCTCTCGG TTCTCGACTT TCTACAAAAA CAATTGGATG
    ACAAGTGATA TGCACGGTTC TAATTTGAAG AGCACACTCA CAGGATATAT
    GCACTATCCA TAATGAGGAT CAGCTCCAGT ACGTAGTCTC TGTGATGCAT
    ATGGAAGGGA GTTGCTCCAG ATCGAATGAA TGGTAACTGG TGTGTATTTG
    AGGTTTGCTG CGACACAGAA TAAATACTTT CGAGTTGTAT ATGTTTCTTG
    TGTCTGCCAC GGGTGGAGAC CTCTTTGAGT CCCTGAGGCA CCACGGAGAC
    GAAACTTCTC GGAAGTACTG ATTCCTTGTT GCCTCTGCCG TGTTATGTGA
    ATGTTATCCC ACTGTATATT TATTGATGAT ATAATATAAG AAAAGAACAG
    CACAGATGTT TTGTATCGCC CTATCAAATT TAAGTTGTTT TGCG

    Gene models with high sequence identity

    1. AT3G54360.1 [+] show detail - zinc ion binding
      E-value: 5e-120; Score: 428.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-type 11.501
    HMMSmart Zinc finger, RING-type 0.0014
    superfamily TPR-like 0.00000000072
    superfamily RING/U-box 0.0000000038
    PatternScan Zinc finger, RING-type, conserved site 0
    Gene3D no description 0.000081
    HMMPanther SUBFAMILY NOT NAMED 0.000022
    HMMPanther FAMILY NOT NAMED 0.000022

    See the detailed result >

    AT3G54360.1

    Model type
    Protein coding
    Short Description
    zinc ion binding
    Computational Description
    zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); Has 748 Blast hits to 691 proteins in 131 species: Archae - 16; Bacteria - 104; Metazoa - 470; Fungi - 16; Plants - 58; Viruses - 8; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR