K07129

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07129

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07129

Determination of introduced cDNA(s)

  • J033090N01 - Rice Full-length cDNAs - Original: J033090N01

    full reading [+] show sequence

    Nucleotide sequence: J033090N01 - full reading 
    GTGAAAAGAG AGAGCAGCAG CGAGAGACGA ACAAAAAACA GAATCCATCG 
    CCATAATCGA AGGTTCGCTC TTGCTTCCAC CCCGCAATCC ACATGGAGAA 
    CGAATTCCAG GATGGTAAGA CGGAGGTGAT AGAAGCATGG TACATGGATG 
    ATAGCGAAGA GGACCAGAGG CTTCCTCATC ACCGCGAACC CAAAGAATTC 
    ATTCATGTTG ATAAGCTTAC AGAACTAGGA GTAATCAGCT GGCGCCTAAA 
    TCCTGATAAC TGGGAGAATT GCGAGAACCT GAAGAGAATC CGCGAAGCCA 
    GAGGTTACTC TTATGTGGAC ATTTGTGATG TGTGCCCAGA GAAGCTGCCA 
    AATTATGAAA CTAAGATCAA GAGTTTCTTT GAAGAACACC TGCATACCGA 
    TGAAGAAATA CGCTATTGTC TTGAAGGGAG TGGATACTTT GATGTGAGAG 
    ACCAAAATGA TCAGTGGATT CGTATAGCAC TGAAGAAAGG AGGCATGATT 
    GTTCTGCCTG CAGGGATGTA CCACCGCTTT ACGTTGGACA CCGACAACTA 
    TATCAAGGCA ATGCGACTGT TTGTTGGCGA TCCTGTTTGG ACACCCTACA 
    ACCGTCCCCA TGACCATCTT CCTGCAAGAA AGGAGTTTTT GGCTAAACTT 
    CTCAAGTCAG AAGGTGAAAA TCAAGCAGTT GAAGGCTTCT GAGGGTTTTG 
    TTGGGCTCCT GCACTGCGGT TCTATATTCA ACCTGAATAA GATGTGCTAT 
    AGCAATGTAA ATTTAGCACA GTGGCTATGG TCGCCACTCA CCAACTTGAT 
    GTGAAAGATT TAATGATTTT TGTTAATTCT TATGTATCAA TCGGCATATA 
    GCATTTCCGA AATGTGTTTT CAATAAACAG AAAGTAAGAG TCATGAAGCT 
    G

    Gene models with high sequence identity

    1. AT4G14710.2 [+] show detail - RmlC-like cupins superfamily protein
      E-value: 3e-89; Score: 325.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cupin, RmlC-type 2e-42
    HMMPfam Acireductone dioxygenase, ARD 7.9e-68
    Gene3D RmlC-like jelly roll fold 6.8e-72
    HMMPanther Acireductone dioxygenase, ARD 6.6e-89

    See the detailed result >

    AT4G14710.2

    Model type
    Protein coding
    Short Description
    RmlC-like cupins superfamily protein
    Computational Description
    ATARD2; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: oxidation reduction, L-methionine salvage from methylthioadenosine; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Acireductone dioxygenase, ARD (InterPro:IPR004313), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: acireductone dioxygenase 1 (TAIR:AT4G14716.1); Has 1544 Blast hits to 1537 proteins in 521 species: Archae - 0; Bacteria - 702; Metazoa - 158; Fungi - 135; Plants - 464; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR