K07215

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07215

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07215

Determination of introduced cDNA(s)

  • J023134H21 - Rice Full-length cDNAs - Original: J023134H21

    full reading [+] show sequence

    Nucleotide sequence: J023134H21 - full reading 
    GAGTAGCACA TATAGTACTG CACGAAGAAC TACACCATGG CGCAAAATGT 
    CCAAGAAAAT GAGCAGGTGA TGAGCACGGA GGACTTGCTC CAAGCTCAGA 
    TCGAGCTCTA CCACCACTGC TTGGCCTTCA TCAAGTCCAT GGCACTTAGG 
    GCCGCCACTG ACCTGCGTAT TCCCGACGCC ATCCACTGCA ACGGCGGCGC 
    TGCCACCTTA ACTGACCTCG CCGCCCATGT CGGGCTGCAC CCGACGAAGC 
    TCTCCCACCT TCGGCGGCTC ATGCGCGTGC TCACTCTCTC CGGCATCTTT 
    ACCGTCCATG ACGGCGACGG CGAGGCCACC TACACGCTCA CCCGAGTCTC 
    TCGCCTTCTC CTCAGCGACG GCGTCGAGAG AACTCACGGC CTCTCGCAAA 
    TGGTGCGCGT GTTTGTGAAC CCGGTCGCCG TGGCTTCGCA GTTCAGCTTA 
    CACGAGTGGT TCACTGTCGA GAAGGCGGCC GCCGTGTCAC TGTTCGAGGT 
    GGCGCACGGC TGCACCCGTT GGGAAATGAT AGCAAACGAT TCCAAAGACG 
    GCAGCATGTT CAATGCCGGC ATGGTAGAGG ATAGCAGTGT CGCCATGGAT 
    ATCATCTTGA GGAAGAGCAG CAACGTTTTC CGGGGCATCA ACTCGCTTGT 
    TGATGTAGGC GGTGGCTATG GCGCCGTAGC TGCAGCCGTA GTGAGGGCAT 
    TCCCTGACAT CAAGTGCACG GTGTTAGATC TTCCTCACAT CGTCGCCAAG 
    GCTCCCAGTA ACAACAACAT CCAGTTTGTC GGCGGTGATC TTTTTGAGTT 
    CATTCCAGCA GCCGATGTTG TGCTACTTAA GTGTATTTTG CACTGTTGGC 
    AACATGATGA CTGTGTCAAG ATTATGCGGC GGTGCAAGGA GGCAATCTCA 
    GCGAGGGATG CTGGAGGAAA GGTAATACTC ATCGAGGTGG TTGTTGGGAT 
    TGGATCAAAC GAAACTGTTC CCAAGGAGAT GCAACTTCTC TTTGATGTTT 
    TCATGATGTA CACCGATGGC ATCGAGCGGG AGGAGCATGA ATGGAAGAAG 
    ATTTTCTTGG AGGCTGGATT TAGTGACTAC AAAATCATAC CGGTGCTGGG 
    TGTTCGATCA ATCATTGAGG TTTACCCTTG ATGCTCCTAG AGGTGTACAT 
    GTGCATCTCA CCATGTGACC TACTCTAGTT CAAATAATTG AACAAAATGC 
    ATAATATGTT ACTTAAAAAC CGATCGGTTT GATGTTAGTA TTTTGATTTC 
    CTTTTATTCA GGAGTCAGTA GTGCGCACGA TCACACCAAG GCCACTGTTC 
    TCATTTTCCT ATGTATGAGC TACAATACGC ACGCCGTTGG ATGGCACGGC 
    TTATGCGCAT CGTGGCTCAA GTCTCGGGCA TGTTGTTAGC CCAAAATTTC 
    CATTCCTATA TTCAACATAA TAAGAGGAAG AGAAAACCGA AAAGCTGCAA 
    GGCAGTTCGC AGCACC

    Gene models with high sequence identity

    1. AT4G35160.1 [+] show detail - O-methyltransferase family protein
      E-value: 2e-36; Score: 150.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam O-methyltransferase, family 2 1.6e-66
    HMMPfam Plant methyltransferase dimerisation 0.00000000016
    HMMPanther O-METHYLTRANSFERASE 2.1e-48
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 1.8e-30
    Gene3D no description 2.7e-68
    HMMPIR O-methyltransferase, COMT, eukaryota 3.3e-147
    superfamily S-adenosyl-L-methionine-dependent methyltrans 5.2e-74
    superfamily "Winged helix" DNA-binding domain 7.4e-32

    See the detailed result >

    AT4G35160.1

    Model type
    Protein coding
    Short Description
    O-methyltransferase family protein
    Computational Description
    O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT4G35150.1); Has 3345 Blast hits to 3334 proteins in 568 species: Archae - 3; Bacteria - 935; Metazoa - 112; Fungi - 688; Plants - 1514; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR