K07225

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07225

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07225

Determination of introduced cDNA(s)

  • J033098D23 - Rice Full-length cDNAs - Original: J033098D23

    full reading [+] show sequence

    Nucleotide sequence: J033098D23 - full reading
    GAGATATCCA ATCCCCAAAG CCTCCACTAA AGTAGTACTA GTATTCTAGA 
    AGCTTCGGAT GGAGCGCCGC CACCGTCCTC GCGCCGCCGC CGCCGCCGCC
    GCTTCTGCCT CCGTCTCCGC CGCCGCCCAC CACCCGGGGG GAGTGCGTGT
    ACATCCCTAC CATACGTCGG CAGGGGTGGT GAAGGGGAAG CTCCACACCC
    GCAAGGCCGC GACGACGTAG TACTACCACG TCAGTTCGAA CAACTCCATC
    CAGGAGGTTC ATCAAGGAGT AGTTGGGGGT CAGATTCCAA GGATTGGTTG
    GCAGATTGAT CCAATTTCGC ACTCTGCAAT TCAGGATTAC TGCCTAGGAA
    TTGATGATTT TTTTTCTCGG GGTTGATTAC CAAGATAGTG ATACGCGGAA
    AGGGAACAGA AGAACTCGAG GTTGTGAGAG GGGCTCCAAG ACTCTCGGCT
    CGTCAGCTGA TTTAAGCAAA TATTATGACG ACAAACCATG CCATGATTAC
    AATGGATACA GACTTCAAAA TTCAATTATG ATTTATCATT ATGGATAAAG
    TTGGTTCAGA ATGATGGACA AACTAATTCA TTATGTCAAT AAGGTTAAAG
    ATGATCATTA ATATTACTAA TACTGACTAT TGTTTAGTTT CTTTGTTTTG
    GTTTCACCAT GAAGTTGCAG TCATGGCATT ACATAATGCA GATATCTTGA
    ACTTGTGATA TGATGATTTC AACGTGTTTA TTCCATTCCC TTAATTGGCC
    ATGCCAATGC TCTCTATTCC ATGTCTTCCA TTTATACTGA TGCAAAATAT
    GCTTAAATGA GCCATGGCCT CTCAAGACAA ATGATTTCTA CCTGTATGTT
    CTATTTTCAT ATTCATAATT GGTATGGGTA ATTTCACTTT GTTTCTTTCA
    CATGCATTTG ACTGTATTTC TTACACCTGG TATGCGGACA ACCCGAATGC
    CTGGACTGGT TCCTTCACAA GAAGACCTTC CTTAAAACAA CAGTCCGTGC
    TATGATTGGT GGTTTTACCA CCCTTTTCAT TATTCTGGCT TTCACATGTC
    CAATTTAAAT GTGATATATT TTCTTGTTCC CTTGGTACTT TGTGGTGCCA
    TATGCTTAAT ATCTTATTTC TTTTCACTTT TCAGGCATCT TGGCTTCTGG
    AATTCTTTTA AGGGGAAAGC AAATTAAATC TCACAACAGA TACTTTAGCT
    GATGCTCTAG CTCTTGCTCA GCACCATGAT GCTGTTACAG GAACAGAGAA
    GCAACATATC ACAAATGACT ATGCGATGAG ATTATCAATT GGCTATACAC
    AAGTGAGCTC TCAAGAATAT TCTTATTCAT ATTTGATGTC TTCCTTTGGG
    ATTTGATCTC TTCAATGAGT CAGGCTCAAA ATAGCGTGTC CATCCCAAAC
    AACAAAAATT GGTCAGTGCC TGCTCTGTAC ATCCCCATGG ATTAGCAGGA
    GGAAGAAGAA GGAAGAGGCA GAGAAGAACA GCTAATTCCC TCATTCATTG
    CTTAACAGCG TATATGTGGC TTCAACTGAC AAGTATGAAA GATTGGATGC
    ATCAGGCTGC CCTCTGGATG TTGTAATTTG TATGCATTTG GACCATTTCG
    AGCAAGAACA TCATAGGGGC CGAGAATTTA TAGACCCACT TAAGATATGA
    CATATTGACA ACTGAAGATT GAGTATAAGG TTGCAGCTTG CCAGCCTCAG
    ATATACACTG GCGATTCAGT ATAAGGTTGC AGCTTCAGAT ATTCTTTGTC
    ACCCACAGGA AACTCCAGCA GATATGTGCT TTTATCAGCA ATATTCTTCA
    TTCTCAAATG TTCTCTAGCC AACTGATTCT TCAAAAATTC AGAATAAGCA
    GCCCTTGTTG TCAGCATATC AGTGGCTTCA TTATCAGCTG AAGCAACTAG
    GTTCAGTGCC AAACAATGTC TTGTGAGGGG AGCTACCCAA GGCTGTGGAT
    GGAGTGCGGT ACTAGGTTCA ATTGAGTATC AAGCTTCGCA AGCAAGTCGT
    TCCAAAATTA CTGTATATCC CTCAATGTGA GGCAAGCCCT CTATAAAATT
    CATGGATAAA TCTTACCAAG CAGTGAAGAA CCTTCAGTGA CTGGTGGAAG
    GGTGAGAAGT CCAGGTAAGG ACTCCATTCA TCAACAGACA ACATGACAGT
    GAGGAATCCT TTACCATAAA TGAAAATCTT CTGATTTTGT GGGCTAAAGG
    CTGTTCAATT AAGCCACTGG ATGACCATTT TGACTCAGCG CAAAGGTTGA
    CCGTTGGATT TGCCACTGGG AATTCATGCT GCCTTGTCCT GGAGAAGGCA
    TGATATCACG CTGTCCCCAT TCCACAATGC CTTTTGGCGG TGCTTTCCAG
    CCCAGATTGG TCGATTCTGC ACAGTGAGAA GTAATCAAGT AAAGATGTGG
    TGCAGGCCAT GAAATGTACA AACAGGAAGA CAGATAAATA TATTGAGGCA
    TAATTGCGTC GAACTCTCAG CTTTTCTGAG ATTATATTAA GTAAATTTTC
    TCACCTCTTT TGCCGTGGAT AACCTTCTGT GAGTGTCAGA TCAGAAATCA
    GTTGTGTTCA GATGAAATCT GCTTCATGTA AACTCAGGCA TGAGACTGTA
    GCATATGCAT TCTCTAGCAA AAGCCTATTA TTAGCCTTAG ATGGCAGGAT
    TTTTGCTTAT TTTCTATGTT TTCTTATCTC TCTTACGTGT TTCTTTTGTG
    TTCTCTCTTT TATATTATTC TTGAATCTTG ACTTCTCTTA AAAGTCTGGC

    Gene models with high sequence identity

    1. AT5G13980.3 [+] show detail - Glycosyl hydrolase family 38 protein
      E-value: 0.00000005; Score: 57.40

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycoside hydrolase, family 38, central domain 0.00000000069
    HMMPanther LYSOSOMAL ALPHA-MANNOSIDASE (MANNOSIDASE ALPH 6.6e-16
    HMMPanther ALPHA-MANNOSIDASE 6.6e-16
    superfamily Families 57/38 glycoside transferase middle d 0.00000000017
    Gene3D no description 0.0000000000058

    See the detailed result >

    AT5G13980.3

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase family 38 protein
    Computational Description
    Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT3G26720.1); Has 1157 Blast hits to 1109 proteins in 192 species: Archae - 7; Bacteria - 147; Metazoa - 691; Fungi - 22; Plants - 155; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR