K07229

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07229

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K07229

Determination of introduced cDNA(s)

  • J023074B05 - Rice Full-length cDNAs - Original: J023074B05

    full reading [+] show sequence

    Nucleotide sequence: J023074B05 - full reading 
    TCAAGATCTT GGCAATCAAG GACTTCTTGG AGGACGAAGA CCAGTCGGAG 
    GACGAGCTGC TGAGCTTGCT GCAGAGCCTG GCAGACATGG ACATCACGTA 
    CAAGGCGCTC CAGGAGACTG ACATCGGACG GCATGTGAAT GGTCTGCGCA 
    AACATCCCTC CGGTGAAGTC CGGCTACTTG TCAAGCAGCT CATCAGGAAG 
    TGGAAGGAGA TAGTGGACGA TTGGGTGCGG TTACACAATT CCAGCGGTGA 
    CGCCAGCAAC TCGATCATCA CCGATGGCAA CTCCCCGGAG AAAATCCAAG 
    GCAAGAACCA GCAAAGCTCT CAGGTTTCAG AGTTCAAGTA TTCCCCCAGC 
    CCAAGTAGGC ATAACAACTC AAGCTCAGAG AGGGTTAGCA ATGGGATCGC 
    GTCGATAGCA GCGACAAAAC ATAGAGCAAG CCCTGCGCCA GCGCATCATA 
    ATGCAAGGCA GATCAACAAC ACCCACCATT CTACTACTTC ATCTTCTGCT 
    CCAGCTAGGA TGGTGAAGGA ACAGAAGGAC AGTCATCTTG ACCTTGAAAG 
    GCTGGACTCT GCGAGGAAGA GACTCCAGGA GAATTACCAG GAAGCACAAA 
    ATGCAAAAAA ACAGAGGACG ATTCAGGTGA TGGACATCAA TGAAATTCCG 
    AAGCCGAAAA ATAGAAATGC CTTCATCCGC AAGGGCAATG GGGGTGGGTT 
    CCCAGCAAGG CACCGGTGAC ATTGCATTTT CTGGGAACCC AGATTTCAAA 
    TTTGTCTTTT ACAAGTTGCA CTAAGAAGAA AAGGAGAAAA AAAAGAGAGG 
    TTTCTTTTCT TCATGTGCTA TGTATTGGCT AGCCTCAACT TCAGTCTGAT 
    ATGTTCCATG TACATGAGAG GGATGCTTAT GGTTTTTGCA GGAGAAATAG 
    AAGTTTAAAA TGTTGCC

    Gene models with high sequence identity

    1. AT5G09850.1 [+] show detail - Transcription elongation factor (TFIIS) family protein
      E-value: 1e-36; Score: 150.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D TFIIS/CRSP70_N 4.19999771339602e-18
    HMMPanther PTHR15141:SF6 9.39999974783874e-06
    ProfileScan Transcription factor IIS, N-terminal 0
    superfamily Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal 1.1e-15
    HMMPfam Transcription factor IIS, N-terminal 6.1e-14
    HMMPanther PTHR15141 9.39999974783874e-06

    See the detailed result >

    AT5G09850.1

    Model type
    Protein coding
    Short Description
    Transcription elongation factor (TFIIS) family protein
    Computational Description
    Transcription elongation factor (TFIIS) family protein; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT5G05140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR