K07237

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07237

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07237

Determination of introduced cDNA(s)

  • J023086E07 - Rice Full-length cDNAs - Original: J023086E07

    full reading [+] show sequence

    Nucleotide sequence: J023086E07 - full reading 
    GACCTCGACC CTCTGCCCCT CAACTCGGTG GTGACCACGC GTCCACATCT 
    CTCATCTTTC TTTCTCCGCT ATTCTCCTCC AGTCCTCTTC TCTTCTTCCT 
    CCCTCCCTTC GCCCACTGAA TCGCCAAAAA AATTCCCCTC CTCCACTCCA 
    TCTCTATAAA AATCCTCCCC CAAATCTCGC CTCGTTTAGC CAGCACAACT 
    CACACAACTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCGT CGTCTGCAAG 
    CTTCCGCCTC CCGGATCGCG GCGACCACCG GAGGAGGAGG GAGCAGCCAT 
    GGCGAACATC GACATGGGGA AGATCCTGGC GGGGCTGGAG AACGACGACG 
    CGCGGGTGCC CAAGACCAAG CTGGTCTGCA CGCTCGGCCC GGCCTCCCGC 
    TCCGTCCCCA TGCTCGAGAA GCTGCTCCGC GCCGGGATGA ACGTCGCGCG 
    CTTCAACTTC TCCCACGGCA CCCACGAGTA CCACCAGGAG ACCCTCGACA 
    ACCTCCGCCA GGCCATGCAC AACACCGGCG TCCTCTGCGC CGTCATGCTC 
    GATACCAAGG GTCCTGAGAT TCGTACTGGA TTTTTGAAGG ATGGCAAGCC 
    AATCAAGCTA ACAAAGGGTC AAGAACTCAC TGTTACCACC GATTATGAGA 
    TCAAGGGTGA TGAGAACATG ATTACCATGA GTTACAAGAA ACTGCCAGTT 
    GATGTGAAGC CTGGAAATGT CATTCTCTGC GCCGATGGTA CAATCTCTTT 
    GACTGTTTTG TCCTGTGATC CAAAGGCTGG AACTGTGAGG TGTAGGTGTG 
    AGAACACAGC AATGCTTGGC GAGAGAAAGA ATTGCAATCT GCCAGGAATT 
    GTTGTGGACC TTCCTACACT GACTGAGAAG GATAAAGAAG ACATTTTGGG 
    ATGGGGTGTG CCAAATGACA TAGACATGAT TGCTCTGTCG TTTGTCCGTA 
    AAGGATCAGA TTTGGTTACC GTCAGACAAC TTCTTGGACA GCATGCAAAG 
    CGCATCAAGC TGATGTCAAA GGTTGAAAAC CAAGAGGGTG TTGTAAACTT 
    CGATGAGATC TTGAGGGAAA CGGATGCATT TATGGTTGCT AGAGGTGATC 
    TTGGAATGGA GATTCCAGTT GAGAAGATAT TCCTTGCACA GAAGATGATG 
    ATTTACAAGT GCAACCTTGC TGGAAAGCCT GTTGTGACTG CTACTCAGAT 
    GCTTGAGTCG ATGATCAAAT CACCACGTCC AACTCGTGCT GAGGCAACTG 
    ACGTTGCAAA TGCAGTTCTT GATGGAACTG ACTGCGTCAT GCTTAGTGGA 
    GAGAGTGCTG CTGGAGCATA CCCTGAAGTA GCTGTGAAGA TCATGGCACG 
    TATATGTGTT GAGGCAGAGT CTTCCCTTGA CAACGAAGCT GTCTTCAAGG 
    AGATGATCAG GTCTGCGCCC CTTCCGATGA GCCCATTGGA GTCTCTCGCA 
    TCCTCTGCTG TACGCACAGC CAACAAGGCC AAGGCAGCCC TGATTGTTGT 
    CTTGACTCGT GGTGGTACCA CGGCAAAGCT GGTTGCCAAG TATCGTCCCA 
    GGGTTCCAAT CCTCTCTGTG GTTGTCCCCG TGTTGACAAC CGATTCATTC 
    GACTGGACAA TCAGCTCGGA GGGCCCAGCA AGGCACAGCC TAATCTACAG 
    AGGTCTTGTT CCTCTCCTGG CTGAGGGTTC TGCCAAAGCC ACCGATTCGG 
    AGTCGACAGA GGTCATCCTT GATGCTGCTC TCAAGTCAGC TGTACAGAAG 
    CAGTTGTGCA AGCCTGGTGA TGCTGTTGTT GCTCTGCACC GTATTGGCGT 
    CGCATCCGTG ATCAAGATCT GCATCGTGAA GTAATCGCTA CACGGTGTCT 
    TCTTAGCGCC ATTTTGCTGG GTTAAGTGGC AAAACAAAAA CTGCTATGCT 
    TGTTTTTACT CCCATAGTCC ATCTTTGGGA GACAATTTAA TTACCGTATC 
    AGCCCCTGCA GTTCGCAGGG TGCCTTTCGT TACATAGATT TGCTGGTAAA 
    ATGAGGAGAG ATAGAACTCC ATTATGTAGA GCTCTATTTA TCGTCGATGC 
    CATGTAGTAT GGTAGGTGGT TTCTATTCCA TGCCTGCACA ATTTTCTGGT 
    AGCTACTGTG TTGTTTGATT ACTGTTTTTT CAGGTGATGT CGATGGAGTT 
    GATAATAATA TTGGCACC

    Gene models with high sequence identity

    1. AT5G08570.1 [+] show detail - Pyruvate kinase family protein
      E-value: 0; Score: 861.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Pyruvate kinase 5.8e-202
    Gene3D Pyruvate/Phosphoenolpyruvate kinase, catalytic core 1.6e-90
    Gene3D Pyruvate kinase, alpha/beta 1.2e-21
    FPrintScan Pyruvate kinase, barrel 2.8e-75
    FPrintScan Pyruvate kinase, barrel 2.8e-75
    FPrintScan Pyruvate kinase, barrel 2.8e-75
    FPrintScan Pyruvate kinase, barrel 2.8e-75
    FPrintScan Pyruvate kinase, barrel 2.8e-75
    FPrintScan Pyruvate kinase, barrel 2.8e-75
    FPrintScan Pyruvate kinase, barrel 2.8e-75
    HMMPanther Pyruvate kinase 1.9e-272
    HMMPfam Pyruvate kinase, barrel 4.9e-157
    HMMPfam Pyruvate kinase, alpha/beta 3.4e-20
    PatternScan Pyruvate kinase, active site 0
    superfamily Pyruvate/Phosphoenolpyruvate kinase, catalytic core 8.1e-95
    superfamily Pyruvate kinase, C-terminal-like 8.7e-30
    superfamily Pyruvate kinase, beta-barrel-like 8.9e-27

    See the detailed result >

    AT5G08570.1

    Model type
    Protein coding
    Short Description
    Pyruvate kinase family protein
    Computational Description
    Pyruvate kinase family protein; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: glycolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: Pyruvate kinase family protein (TAIR:AT5G63680.1); Has 10268 Blast hits to 10160 proteins in 2717 species: Archae - 168; Bacteria - 6093; Metazoa - 541; Fungi - 219; Plants - 538; Viruses - 0; Other Eukaryotes - 2709 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR