K07304

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07304

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07304

Determination of introduced cDNA(s)

  • J033128P13 - Rice Full-length cDNAs - Original: J033128P13

    full reading [+] show sequence

    Nucleotide sequence: J033128P13 - full reading 
    GCTAACCTAG CTCATTAGCC GCCGCAGCTG CAGGAGAGAA AACACGAGCA 
    GCAGTAGTAG TAGTACAACG CCACCCACCA CACAGTGTCC GTGTGCTGCG 
    GGTGTGGACG CACTGGCCTC CACCCATCTC TCTCACCGCC TCTGCAGCAG 
    CAAAAGGCGA AGGCACAGTA CAAAGATTCA GCTAGCACCC ACCACCACCC 
    CGATTTATAG CCAGCCACGC CATCCATGGC GAGGAAGTGC TCCTACTGTG 
    GCAACTACGG CCACAACTCA AGAACCTGCA GCAGCAGCGC CAGCGCTGGA 
    CACAGGGATA CCACCATGCT CTGCGACGGC GGCGACGGAG GTGGCGGCAG 
    TGGGCTGAGG CTGTTCGGAG TGCAGGTCCA TGTCGCTGCC GGCGGCGGCG 
    GTGGAGGTGG AGGTGGAGGT TTGCCGATGA AGAAGAGCTA CAGCATGGAC 
    TGCCTGCAGC TGGCGGCGGC GGGGGCGGCT CCGGGCTCGC TCGTGTCGCC 
    GTCGTCGTCG TCCTCGTCGT CGATGCTCCT GTCGATCGAC GAGGGGGGCT 
    TGGAGAGGGC GTCCAATGGG TACCTGTCTG ATGGCCCCCA TGGCAGAATT 
    GTCCAGGAGA GGAAGAAAGG AGTTCCGTGG AGCGAGGAGG AGCACCGGCT 
    GTTCCTCGTC GGGCTCGAGA AGCTGGGCAA GGGCGACTGG CGAGGCATCT 
    CCCGGAGCTA CGTCACGACG AGGACCCCGA CCCAGGTCGC CAGCCACGCC 
    CAGAAGTTCT TCCTCAGGCA GAGCAGCATC GGCAAGAAGA AGCGCCGCTC 
    CAGCCTCTTC GACATGGTGC CGATTTGCGA GAACGGTGCG CGCGTCTCGG 
    AGCAGCTGAG CGGCGAAGGC GCGGCGGCGG CGGCGGCGGC GTCGACCTCA 
    CTGTCGCTGA TGAACACGCA CGAGACCTCC TCGGACAGAG TGGCGGCAAT 
    TGATCTGAAT TCCACCGAGG AAGATGACAC GGTGGGCGCG TCAGGGAGGC 
    CGTTTTTCCC GGTGGTTCTG ATGGAGCAGC AGCAGCAGGC TTCCCATGGA 
    CATGGTCACC ACCACCACTG CACGCCGCTC GACCTGGAGC TCGGCATGTC 
    CGTCTCGTCG ACGCCGTCCA TCGGCACATG ACCCGGCCAT GCCATGCACA 
    CCGTCGTCGT TAGGAGATGC TCCAGTTTCG TCGGTGCAAG GTCTGCAGGA 
    TATAGTACAC GCTGTAAAAC TGTGGCTGAT ATATCTGCAG TCTGATCTGT 
    CTGCCAAGTG GAGTAAAGGG CTGGAGTATT TTGGCAAATG TTTGTAGTAA 
    TTGTAAAGCT GGTGCAAGTG GAGAGATCAA CGAGTAGTAC CAACTGTGGA 
    TACAGTAATG TCCGTACTAC TTTTTAATTA ATTAGGTTGT GTAATCAGAG 
    ACACCGATTC TCTACTGCTC ATGTCATGTG CGCCTTGTGT TCATTGGCTT 
    TTGCTTAAGT TTTGGGAAGA TTGCAACTCT GCCATTGCTG

    Gene models with high sequence identity

    1. AT5G56840.1 [+] show detail - myb-like transcription factor family protein
      E-value: 3e-35; Score: 146.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Myb, DNA-binding 5.9e-11
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 5e-24
    superfamily Homeodomain-like 2.9e-16
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 17.403
    HMMSmart SANT, DNA-binding 8.5e-10

    See the detailed result >

    AT5G56840.1

    Model type
    Protein coding
    Short Description
    myb-like transcription factor family protein
    Computational Description
    myb-like transcription factor family protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Zinc finger, CCHC-type (InterPro:IPR001878), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT5G47390.1); Has 1025 Blast hits to 1022 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 894; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR