K07313

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07313

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07313

Determination of introduced cDNA(s)

J023086K16 - Rice Full-length cDNAs - Original: J023086K16

full reading [+] show sequence

GGGCGAAGCG GCCGGCGGCT GAGGCGAGAT TCGCGGCGAC CACGTCGGCG 
AGGAGCGCGA GAGTGGGGGC CCTCCTCCTG TCCGCCGTCC GCATTCTCGT 
CGTGTCTGGT TTGAGCTGCT GCTGCTGCTG CTGCCGGTGG GAGTTGGGCT 
GCTTGCTTGC TTGGTTTGAT TGGTGGAGGT GGGAGGAGTA CTGGAGTAGG 
CGAGTAGCTG TGGGTTGGGG TCGGCGAGGG ATCCGGGCGG CGGGGTATGG 
GGAACGCGAG CGGCAAGGAA GGGGAGGAGA ACGGCCACGT GGCGGCGGGG 
GCCGCCGCCG GAGTGGCTGG CTCGGCGGGG GCAGCGGCCC GGGCTCCGCC 
GCCGCTTATG CCGCCGGACG CCGTGATGCG GGAGCTGCCT CCCCCGGTGC 
CCTACGTCTT CACGCCGCAG GTTCCAGTAG CCCCACTGCA TATACCTACT 
GAATTTTCTC CTGTTTTCAA CAATTCATGG ATAAATGAAT CGGATGAATC 
CACCAATAAC CATCCCCAGG AGAAGGGAAT TCCAACTTTG ATCTCATGGA 
GTCAAGGAGG AAATGAGGTG TTTGTGGAAG GATCATGGGA TAACTGGACA 
TCAAGGAGGG TGTTAGAGAA GTCTGGGAAA GACCATACCA TATTGCTAGT 
TCTGCCATCA GGGGTATACC ATTACAGGAT CATCGTCGAT GGGGAACCGA 
AATATGTCCC TGAACTACCT CATGTGGCTG ATGAGGGAGG GCAGGTTGCC 
AACCTCCTCG ATGTCCATGA TTATATCCCA GAAAGCCTGG GCAGCGTGGC 
AGGATTCGAC TCTCCTCCGT CGCATGAACA CAGCTATGAT CTCCAGCTCC 
CAGGTGATGA GGAGTTTGCC AAGGAGCCAC CTATACTGCC ACCTCAGCTT 
GTAATGTCTG TTCTTGGTGA TACTGATAAC TCTGAAGAAC AAACTCTGAA 
GCCAAAGCAT GTTGTCCTCA ACCACCTGTA TATCGAGAAA GGATGGGGAT 
CGCAGTCGCT GCTTGCTCTT GGAGTCACTC ACCGGTTTCA ATCCAAGTAT 
GTAAGCTTCG TGCTGTACAA GCCGCTGCGA AGGTCATCCA CGGCGAAGCG 
AACAAAGAAT GGTGGTTAAA CTCATGGTAA CTGACAATGT ACATAAGTGA 
AATGCAGGAG GTCTTGTTGT TTGATGCTGA TCAAAGCAAT CAACTTTTTT 
TTTAATTTCT CTCTTTGTTT CTTTAATAAG CTGTTGTTGT AGCATGATGT 
TTTAGAAGCC TGAACTCTAT GAGAAAATGA GTCAAGAGAG GGATGAAAAA 
AAAAGAGAAT ATCCCTCTAT GCTTACCTAA TGTCAGTGTG CAAATTTGTG 
TGGTCTGAGA GTAATGGTGC ATGGAAATTT G

Gene models with high sequence identity

AT5G21170.1 [+] show detail - 5'-AMP-activated protein kinase beta-2 subunit protein
E-value: 1e-76; Score: 284.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	5-AMP-activated protein kinase, beta subunit, interaction domain	9.5e-19
HMMPanther	SNF1-KINASE BETA SUBUNIT, PLANTS	1.1e-117
HMMPanther	5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNI	1.1e-117

See the detailed result >

AT5G21170.1

Model type: Protein coding
Short Description: 5'-AMP-activated protein kinase beta-2 subunit protein
Curator Summary: Encodes AKINbeta1, a subunit of the SnRK1 kinase (Sucrose non-fermenting-1-related protein kinase). Involved in regulation of nitrogen and sugar metabolism.
Computational Description: AKINBETA1; FUNCTIONS IN: AMP-activated protein kinase activity; INVOLVED IN: N-terminal protein myristoylation, cellular response to nitrogen levels; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, interaction domain (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase beta-2 subunit protein (TAIR:AT4G16360.3); Has 697 Blast hits to 689 proteins in 198 species: Archae - 0; Bacteria - 3; Metazoa - 248; Fungi - 167; Plants - 204; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link: InterPro Scan - TAIR