K07317

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07317

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07317

Determination of introduced cDNA(s)

  • J013001I18 - Rice Full-length cDNAs - Original: J013001I18

    full reading [+] show sequence

    Nucleotide sequence: J013001I18 - full reading 
    GAGTGAAGCC GCCCCGCGGA GCTAGCTAAA CCCTAGCCAC TGCCCGGGCG 
    GAGAGTTGGG GTTTGGGTTG GTGGCGGTGG GCCGGTGGCG GCTCGGTGGC 
    GGAGCTCCGG TGTGGGGTGG TGTGGAATGG AATGGAAGTT ATTCGATGAT 
    TTCCCAGGAT TTTGACTAGG CCACAGATGG TTACAAGTTG CATTCATGGT 
    CAAAATTGTG TCTGAACATA GAGATTCTTT GGAGTTCATA GACGAAGTGA 
    TTTGTTTTGT TCAATACTTC CACACTTATA ATGGGTGCTG TCTGCTCAAG 
    GAAGAGGAGC CAATTAGTGC ACGAGGATGA CTCTTTCCAG ACATCTTCCA 
    GGTTCTCAAA GACCAGCAGC TTGAAATGGC TGCTGCTTAC ACTGCCACGC 
    AGCAATTCCG ATGTCTCCCG CAAGGGCCAG GGAAAGGGCC CTGGTCGTTG 
    CCCATCTCTA ATGGAGCTTT GTGTGGCCAA AGCCTGCGAG GATATTAACA 
    AGTATTCTAG TTTTTCTGTA TTGCCGAGGG ATCTCAGCCA GCAGATTTTT 
    AATGAATTGG TAGCGTCGAA CCGTCTCACG GAGACATTGC TTGAAACTTT 
    TCGGGATTGT GCACTACAGG ACATTGATTT GGGGGAGTAT CCTGGAGTGA 
    ATGATGCTTG GATGGAAGTA GTGGCTTCTC AAAGGCATTC ATTGTTATCA 
    GTTGACATTT CTTGCTCTGA AATAACTGAT AGTGGGTTAT ATCTTCTTAG 
    AGATTGTCCA AACATGCAAA GCTTGGCATG TAATTACTGT GATATGATCT 
    CAGAGCATGG CCTAGGAATC TTGTCAGGTC TTTCAAACCT GACATCTCTC 
    AGTTTCAAGA GCAGCGATGG TATTACTGCT GAAGCAATGG AAGCATTTGC 
    TAATTTAGTT AATTTGGTAA ATCTTGATCT CGAACGATGC CTAAAGATTC 
    ATGGTGGCCT TGTTCACTTA AAAGGCCTCA GGAATCTGGA GTCACTCAAT 
    ATGAGATATT GTAACAACAT TGCAGATTCA GATATCAAAT ACTTATCAGA 
    TCTCACAAAT TTGAAAGAAT TGCAATTGGC TTGTTGTAGA ATCACTGATC 
    TGGGTGTTTC TTATCTTAGA GGCTTGTCCA AGCTAACACA GTTGAATTTG 
    GAGGGCTGTC CAGTGACTGC TGCCTGTTTG GAAGCTATAT CAGGATTGGC 
    TTCTCTGGTG GTGTTGAATT TGAGTCGGTG TGGCATATAC GGTGAAGGCT 
    GTGAAAACTT TCAAGGTCTT AAAAAATTGA AGGTTTTAAA CTTGGGGTTC 
    AATAATATCA CAGATGATTG TTTAGCACAT CTGAAAGAGT TGATCAATTT 
    GGAATCTCTA AACTTGGACT CATGCAAGGT TGGAGATGAA GGCTTATTAC 
    ATCTGAGAGG CCTTATGCTT TTGAAAAGTT TGGAGCTATC TGACACCGAA 
    GTTGGAAGCA GTGGACTCCA GCATCTATCT GGCCTTCGGA ATTTGGAAAG 
    CATCAATCTC TCGTTTACGT TAGTTACTGA TACCGGTATG AAGAAGATAT 
    CTGCACTGAA TTCACTGAAG TCAGTTAATC TTGACAATCG GCAGATTACT 
    GATGTTGGCT TAGCAGCACT TACAAGTCTC ACTGGGTCGA CTCATCTGGA 
    CCTTTTTGGT GCTAGGATAA CGGACTATGG CACAAGCTGC TTCAGATTTT 
    TTAAGAATCT TGAATCTCTT GAAGTCTGCG GTGGGTTAAT TACTGATGCT 
    GGAGTGAAGA ATATCAAGGA TCTCAAAGCT CTGAAGCAAC TCAATCTTTC 
    TCAGAACGTT AACCTGACAG ACAAAACCCT GGAGCTGATT TCTGGCTTAA 
    CTGCTTTAGT CTCGCTGAAC GTCTCCAACA CTCGTGTATC CAATGCCGGC 
    CTCCGCCACC TGAAGGATCT GCAGAACCTG CGCTCGCTGT CGCTTGATTC 
    CTGCAGGGTC ACGACAAGTG AGGTGAAGAA GCTGCAGGCG ACGGTGCTCC 
    CCAACCTGAT AAGCGTTCGA CCCGAGTAGC TGGACGCTAC ATGATCACCT 
    GTAAATAATC ATCTGGATGG CTTCATGTAG ATAGCTTTGC AAGGGCCTGG 
    ATTGAAGCCA GATTAATAAG TAAAGTCTAT GGTAGCATTT GTTGGCCTAA 
    AACCGGGAGA CGTTGGCCCA ACCGGGAGAA AGCCTTTCTA CACCCCAAAA 
    GCTAGCTCAT GAGGTGAGGG ACCCCTCCCC TTTTAAGTTG GTGCCACTCC 
    CCCTAAACTT TCAATGTGGG ACTATTCTCA ACAGCATTTA CTAGGTCCTT 
    CCTGCTCCGT TTATCGGGAT CTTTTCGTTT TCAAGTACTG AAAAAATTAC 
    TTGTATTTCC TTCACTCCGT GTACCCTCCA AGGCGTGACG GGAAGGAACA 
    AAATTGTAAA TATTGCGCTT CCTCGCCATT GTGGGATGCT TATGTGTAGT 
    GTGGTGTACA GTGCCGCATT TTCTGTGGCA GTTTGTGATG TCATTGTGCT 
    TGGGTTT

    Gene models with high sequence identity

    1. AT1G15740.1 [+] show detail - Leucine-rich repeat family protein
      E-value: 0; Score: 694.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 650
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 19
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 4
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 73
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 72
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 110
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 240
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 10
    superfamily RNI-like 8.5e-50
    superfamily RNI-like 4.5e-23
    Gene3D no description 1.2e-33
    Gene3D no description 2e-08
    HMMPanther F-BOX/LRR PROTEIN-RELATED 2 3.9e-109
    HMMPanther F-BOX/LEUCINE RICH REPEAT PROTEIN 3.9e-109

    See the detailed result >

    AT1G15740.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat family protein
    Computational Description
    Leucine-rich repeat family protein; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT4G23840.1); Has 38052 Blast hits to 19856 proteins in 856 species: Archae - 6; Bacteria - 8624; Metazoa - 11681; Fungi - 680; Plants - 12072; Viruses - 79; Other Eukaryotes - 4910 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR