K07333

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07333

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07333

Determination of introduced cDNA(s)

  • J023141D23 - Rice Full-length cDNAs - Original: J023141D23

    full reading [+] show sequence

    Nucleotide sequence: J023141D23 - full reading 
    GATCCAAACA GCTTCCTTCC TCCCCCCTCC TGGCTCCGCT CGCTGGATCT 
    CTCCTCTTTC TCTCTCGCAC CCTCTCCCCG GCGAGGTAGG AGGGATGGGG 
    CGGGAGGTGG CGGAGAGCTG CGTCGACGGG GTGGTCATGC AGATGGTGGC 
    GGCCTACTGC GGCGGCTTCT ACGCCGCCAA GCCGGAGCTC GCCGCCCGTC 
    GCATCGAGGC CATCGGCTTC CAGGTCGGCC ACCAGCTCAC CGAGAGGCCA 
    GTGCTGCAAA GTTAACCAAA GTTTCTGTTC AAAATCAGAT ATACTATGGA 
    GCGCCCTCGA TTTAGTGATC ATCTTGAAGC AATCAAATTT ATCTGCAAAG 
    ACTTTTGGTC AGAGTTATTC AAGAAGCAAA TTGACAATCT GAAGACTAAT 
    CATAGGGGCA CATTTGTTCT TCAAGATAAC CATTTCCGGT GGCTTACTCG 
    TGTTTCTGTA GATCCATCTG TAGAGAGCAT GGATGCAACT GAGAATGATT 
    CTACAACACT AGGTGATAGC GCAGCCCAAA CAACAAGCAT GCTTCTGTAC 
    TTTCCATGCG GGATAATAAG AGGTGCCTTG ACCAATTTGG GGATTTCTTG 
    TTCTGTCACT GCAGACATGT CCAACCTTCC AGCATGTTCT TTTGTTGTGC 
    GCATAAAGAC ATGAGCTGCA ATAAATGATT TGAATACCAT TATATGCATG 
    CTTGTGGTAT AAAGTGGTCT GTACATTCAA GGAGGGGGGA AACCCGCCGT 
    GTAGCTGGTC TTTTTTTTTT TTCCTTTCCC CTCTTGTTCT TACTGGCACA 
    TGTTTACTTT TCCTCATACC TGCCTTGTGC GCTTATTAAG ATTGGTGTAA 
    TTCTGTGATC CAAAATGTTG ACAAGGGAAG ACAAATGTAA TATTTCTCCT 
    GAGAGACTGG CTATAGCTAA CTTTTGTTGT CG

    Gene models with high sequence identity

    1. AT3G05000.1 [+] show detail - Transport protein particle (TRAPP) component
      E-value: 1e-71; Score: 266.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transport protein particle (TRAPP) component 3.1e-31
    HMMPanther TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9.4e-56

    See the detailed result >

    AT3G05000.1

    Model type
    Protein coding
    Short Description
    Transport protein particle (TRAPP) component
    Computational Description
    Transport protein particle (TRAPP) component; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194); Has 457 Blast hits to 457 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 137; Plants - 66; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR