K07339

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07339

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07339

Determination of introduced cDNA(s)

  • J033029N05 - Rice Full-length cDNAs - Original: J033029N05

    full reading [+] show sequence

    Nucleotide sequence: J033029N05 - full reading 
    TTGGGGTAAG CTAGGGTTTA GGTCTCGGCG CGCGGCGGAG GGGAGGAGGA 
    GGCGATGGCG GCGGCGGCGG CGGCAGCGGC GGCTGAGGAG GAGATCGCGG 
    TGAAGGAGCC GCTGGATCTG ATCAGGCTCA GCCTCGACGA GCGCATCTAC 
    GTCAAGCTCA GGTCCGACCG CGAGCTCCGC GGCAAGCTCC ATGCATACGA 
    TCAACATTTA AACATGATTC TTGGAGATGT TGAGGAGATC GTGACAACAG 
    TTGAGATTGA CGATGAGACA TATGAAGAAA TTGTGCGCAC CACAAAACGC 
    ACTATCCCCT TCCTTTTTGT TCGAGGTGAT GGTGTCATTT TGGTTTCTCC 
    ACCCCTCCGA ACGGCATGAA GTATGAAGGA AGCTCCTGCC GATTGTCAAC 
    CATGAGTAAT GTGTATTTTT TAATCAATGG CATGTGTTAT GTGCTGAAGT 
    GCTACTATTT CTGATGGATT CTAGTTTTAG CATATGATAC AATTGTGTAA 
    CAATTTCTGA TCGAGGTGCT AGTTTCTACT GTCATGTTGA ATCAACCTTT 
    TGTTACCAGA TTAATCAACT CAATCCCGAA GC

    Gene models with high sequence identity

    1. AT1G76860.1 [+] show detail - Small nuclear ribonucleoprotein family protein
      E-value: 3e-42; Score: 168.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.9e-25
    HMMPanther U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 9.8e-52
    superfamily Like-Sm ribonucleoprotein (LSM)-related domain 2.3e-21
    HMMPfam Like-Sm ribonucleoprotein (LSM) domain 4.3e-17
    HMMSmart Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type 3.3e-20

    See the detailed result >

    AT1G76860.1

    Model type
    Protein coding
    Short Description
    Small nuclear ribonucleoprotein family protein
    Computational Description
    Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G21190.1); Has 1289 Blast hits to 1289 proteins in 302 species: Archae - 306; Bacteria - 0; Metazoa - 397; Fungi - 221; Plants - 178; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR