K07342

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07342

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07342

Determination of introduced cDNA(s)

  • J033099K11 - Rice Full-length cDNAs - Original: J033099K11

    full reading [+] show sequence

    Nucleotide sequence: J033099K11 - full reading 
    GGGGAGCGAG CATTGAAGCA TACGTATATC CATCTCCAGA AACTCGATCA 
    AGCATACTAG CTGAGACAGA TCGAGTCACC TAGCTATTTG AGCAAATGGG 
    AGCTGTCAAT GGTGTTTGCT ACGGTGTTCT TGGCGACATC CTCCCGCCGC 
    GGAGCGAGGT CGTGCAGCTG CTCAAGTCCC AAGGCATCGG CGCGATGCGC 
    ATCTACTACC CGGACAAGGA GGCCCTCGAC GCGCTCCGCG GCAGCGGCAT 
    CGCCATCATC GTCGACGTCG GCGACAGCGG CGCGGTGGCC AACCTCGCCA 
    GCAACCCCTC CGCCGCCGGC GACTGGGTCC GGGACAACGT CGAGGCCTAC 
    TGGCCGAGCG TCATCATCCG CTACATCACC GTCGGCAACG AGCTCCCCGC 
    CGGCGACATG GGCCTCATCC TCCCGGCCAT GCAGAACGTG CACAAGGCCC 
    TCGTGTCCGC CGGCCTCTCG AGCAGCATCA AGGTGTCGAC GGCGATCAAG 
    ATGGACGTGG TCGCCAACAC GTTCCCTCCG TCGCACGGCG TGTTCCGCCC 
    CGACGTGCAG CAGTTCATGG CTCCCATCGC GCGGTTCCTC GCCAACACCG 
    TGTCGCCGCT GCTCGTCAAC GTGTACCCCT ACGTCTCCTA CAGGGAGAAC 
    CCGCGCGACA TCAGCCTCAA CTACGCCACG TTCCAGCCGG GCACCACGGT 
    GAGGGACAGC GACAGCGGCC TCACCTACAC CAACCTCTTC AACGCCATGG 
    TGGACGCCGT GTACGCCGCG CTGGAGAAGG CCGGCACGCC CAACGTCCGC 
    ATCGCCGTGT CGGAGACCGG GTGGCCGTCG GCGGGAGGGT TCGCGGCGAC 
    GGCAGAGAAC GCGATGAACC ACAACCAGGG CGTGATCGAC AACGTCAAGA 
    ACGGGACGCC GAAGCGGCCC GGGCCACTGG AGACGTACGT GTTCGCCATG 
    TTCAACGAGA ACCAGCAGAC TGGCGATGAG ACCAGGAGGC ATTTCGGCCT 
    CTTCAACCCT GACAAGACGC CGGCCTACCC GATTACACCT TATCCTCGTC 
    CAGCCGTGCA ATCCATCGGC GTGTGCTACG GCATGGTGGG CAACGATCTC 
    CCGTCACGTA GCGAGGTGGT GCAGATGTAC GTGTCCCTGG GCATCAATCG 
    GATGCGCATC TACAATCCCG ACAGGGAGGC GCTGGACGCC CTGCGCAACT 
    CCGGCATCGA CCTCATCCTC GACGCTGGCG GCTTCGACAC GGTGTCCTAT 
    CTCGCCGCCA GCTCCTCCAA CGCGGCGTCA TGGGTCCACG ACAATATCAG 
    CCCCTACTAC CCGGCCGTCA ACATCAAGTA CATCGCCGTC GGCAACGAGG 
    TGGTAGGCGG CACCACGGAG AGCATCCTCC CGGCCATGCG CAACGTCAAC 
    TCCGCCCTTG CCGCGGCCGG CATCGGCGGC ATCAAGGTTT CCACCGCGGT 
    GAAATCCGAC GTGATCGCCA ACTCTTACCC TCCCTCCGCC GGCGTGTTCG 
    CGTATCCCTA CATGAATGGC ATAGCTCAGT ACCTGGCGAG CACTGGCGCG 
    CCGCTGCTGG CCAACGTCTA CCCCTACTTC GCCTACGCCG GCAACCCGCG 
    CGAGATCAGC CTCAACTACG CCACGTTCCA GCCGGGCACG ACGGTGAGGG 
    ACGACGGCAA CGGGCTCACC TACACCAACC TGTTCGACGC CATGGTGGAC 
    TGCATCTACG CCGCGCTGGA GAAGGCCGAC GCCGGGAACG TGAGGGTGGT 
    GGTGTCGGAG AGCGGGTGGC CGTCGGCGGA AGGGATCGGG GCGAGCATGG 
    ACAACGCGAG GGCGTACAAC CAGGGGCTGA TCGACCATGT CGGGCGTGGC 
    ACGCCCAAGA GGCCCGGACA GATGGAGGCG TACATATTTT CCATGTTCAA 
    CGAGAACCAG AAGACAGGGG CTGCCACCGA GAGGCATTTT GGCCTCTTCT 
    ACCCTAACAA GTCGCCGGTC TATCAGATTG CCTTTTCGAA TTAGCAGCTG 
    CCAATATAAA TGAGTTACAG CCTTACAGGT GATCGATCGA GTAATGCTTC 
    ATTAAATGTT GGGCGTATTT TAATGTTCTC AGTATGTTAC TTTATGTTTT 
    ATAATAAAAG CTACATGAAT ATAAACTTTT CAAGGTTTCT TATC

    Gene models with high sequence identity

    1. AT4G16260.1 [+] show detail - Glycosyl hydrolase superfamily protein
      E-value: 3e-76; Score: 283.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Glycoside hydrolase, family 17 0
    superfamily Glycoside hydrolase, catalytic core 3.2e-108
    superfamily Glycoside hydrolase, catalytic core 3.7e-108
    HMMPfam Glycoside hydrolase, family 17 9.2e-128
    HMMPfam Glycoside hydrolase, family 17 3.8e-131
    Gene3D Glycoside hydrolase, subgroup, catalytic core 1.9e-115
    Gene3D Glycoside hydrolase, subgroup, catalytic core 9.8e-118

    See the detailed result >

    AT4G16260.1

    Model type
    Protein coding
    Short Description
    Glycosyl hydrolase superfamily protein
    Computational Description
    Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: defense response to fungus, incompatible interaction, response to salt stress; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 1 (TAIR:AT3G57270.1); Has 2169 Blast hits to 2154 proteins in 141 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 22; Plants - 2121; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR