K07409

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07409

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07409

Determination of introduced cDNA(s)

  • J023001E07 - Rice Full-length cDNAs - Original: J023001E07

    full reading [+] show sequence

    Nucleotide sequence: J023001E07 - full reading 
    GCTTTTTGCC CCCCTCCTCT CCTCCGCCTC CTCCACACAC GAGCGCGTCC 
    CCCGACGCCG CGCCGAGATC TAGGGTTGGG CGCGCGCGAC GCCCCCCCCC 
    CGCGGCGAGG AGGATGAGCA GCCCCCATGG CGGCCTCGAC GACCAGATCG 
    AGCGCCTCAT GCAGTGCAAG CCCCTCCCCG AGCCCGAGGT CAGAGCACTT 
    TGCGAGAAGG CAAAAGAGAT ATTGATGGAG GAGAGCAACG TTCAACCTGT 
    AAAGAGTCCT GTTACAATAT GTGGTGATAT TCATGGGCAG TTTCATGACC 
    TTGCAGAACT GTTCCGAATC GGTGGAAAGT GCCCAGATAC AAACTACTTG 
    TTTATGGGAG ATTACGTGGA TCGTGGTTAT TATTCTGTTG AAACTGTCAC 
    GCTTTTGGTG GCTTTAAAGG TTCGTTATCC TCAGCGAATT ACTATTCTCA 
    GAGGAAACCA CGAAAGTCGA CAGATCACTC AAGTTTATGG ATTCTATGAC 
    GAGTGCTTAA GGAAGTACGG GAATGCAAAT GTGTGGAAAA CTTTTACAGA 
    TCTCTTCGAT TACTTCCCCT TGACAGCATT GGTTGAGTCA GAAATATTTT 
    GCCTGCATGG TGGATTATCG CCATCCATTG AGACACTTGA TAACATACGT 
    AACTTCGATC GTGTCCAAGA AGTTCCCCAT GAAGGGCCCA TGTGTGATCT 
    TCTGTGGTCT GATCCAGACG ATCGATGTGG TTGGGGTATT TCTCCTCGAG 
    GTGCTGGATA CACCTTCGGG CAGGATATAT CAGAGCAGTT CAACCATACC 
    AATAATTTAA GACTTATTGC TAGAGCTCAC CAGTTGGTCA TGGAGGGATT 
    CAATTGGGCT CATGAGCAAA AAGTTGTTAC CATATTTAGT GCACCTAATT 
    ATTGCTATCG CTGTGGGAAC ATGGCATCAA TCTTGGAAGT TGATGATTGC 
    AGGGAGCATA CATTCATCCA GTTTGAGCCA GCCCCAAGAA GGGGAGAGCC 
    AGATGTAACT CGTAGAACAC CTGACTATTT CCTGTGATGT AAAAGTGGTG 
    GACTGTCTCT GCAGCAAATG TTTGATAGCT AGGTGAAGTT CCCTGGTTGC 
    AGATATTTTT TTCCCCTCGA ATCTCCTGTG TGTTATTCTT ACTACCTTTG 
    CCCGTGGCGC TTGGCTATCG CGAGCTGCTT TGCTGCATCA TGATTCAAGT 
    GTATACCTAC AGCTGGGAGG ATTCATCGTG TTCTCACTTA TCTCTAATTG 
    GCTGATGCTT GGCTTGGGGG CTGCAGTGGT GACTCGAAGC ATCAAGTAGC 
    AAATTTGTAT TATGAAAGGA AAACTATTCT CTTTGTATTC ATTTTGTTCG 
    CCTTTCTTCC CCACAAATTT CACCTAATTT TCTTTTTTCT TTTTTCATGA 
    TCCTTGTAGA GATGAACAAT GTAGTTGTAT GGCTCCCTGT TGAGCCGGTA 
    GGTCTTTCTG AGTACATCTT GATTTGCCGT ACATAATTGC TTGAAAAACA 
    AGTATTAGAA TTCTTTGTGA CC

    Gene models with high sequence identity

    1. AT3G58500.1 [+] show detail - protein phosphatase 2A-4
      E-value: 4e-176; Score: 614.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Metallophosphoesterase 7.1e-42
    Coil coiled-coil 0
    superfamily Metallo-dependent phosphatases 5.8e-128
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4e-90
    FPrintScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 4e-90
    HMMSmart Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 8.5e-163
    Gene3D no description 2.7e-126
    PatternScan Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 0
    HMMPanther SERINE/THREONINE PROTEIN PHOSPHATASE PP2A 7.8e-264
    HMMPanther Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase 7.8e-264

    See the detailed result >

    AT3G58500.1

    Model type
    Protein coding
    Short Description
    protein phosphatase 2A-4
    Curator Summary
    Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].
    Computational Description
    protein phosphatase 2A-4 (PP2A-4); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A-3 (TAIR:AT2G42500.1); Has 6816 Blast hits to 6628 proteins in 481 species: Archae - 80; Bacteria - 203; Metazoa - 2402; Fungi - 1409; Plants - 984; Viruses - 3; Other Eukaryotes - 1735 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR