K07444

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K07444

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K07444

Determination of introduced cDNA(s)

  • J013121A03 - Rice Full-length cDNAs - Original: J013121A03

    full reading [+] show sequence

    Nucleotide sequence: J013121A03 - full reading 
    GAAAAACGTA CCCTTGTGAC TACACCCGCT TCGCTTCCTC CCCTCTCTAA 
    GCCGGGGAAG CTAAGCCATG GCGTCCGTCA CCGCCCGCAC CCCGGTCGCA 
    GCCCTCCGCT CGTCGGCGTC GCTCAAGTCT ACCTTCCTAG GGCAATCCTC 
    CACCCGCCTC GCCCGCGCAC CGACTACGAG GCGTAATGTT CGGGCGGAGG 
    CCAAGGGAGA GTGGCTCCCC GGCCTCCCTT CTCCCACCTA CCTCAACGGC 
    AGCTTGCCAG GCGATAACGG GTTCGACCCG TTGGGTCTGG CGGAGGACCC 
    GGAGAACCTG CGGTGGTTCG TGCAGGCGGG GCTGGTGAAC GGGCGGTGGG 
    CGATGCTGGG GGTGGCCGGG ATGCTGCTGC CTGAGGTGCT GACGAAGATC 
    GGGTTGATCG ACGCGCCGCA GTGGTACGAC GCCGGCAAGG CCACCTACTT 
    CGCGTCGTCG TCGACGCTGT TCGTCATCGA GTTCATCCTG TTCCACTACG 
    TGGAGATCCG GCGGTGGCAG GACATCAAGA ACCCTGGCTG CGTCAACCAG 
    GACCCCATCT TCAAGAGCTA CAGCCTCCCG CCGCACGAGT GCGGCTACCC 
    CGGCAGCGTC TTCAACCCCC TCAACTTCGA GCCCACCCTC GAGGCCAAGG 
    AGAAGGAGCT CGCCAACGGG AGGCTGGCGA TGCTGGCGTT CTTGGGGTTC 
    CTGGTGCAGC ACAACGTGAC GCAGAAGGGG CCCTTCGACA ACCTGCTGCA 
    GCACCTGTCT GACCCGTGGC ACAACACCAT CATCCAGACG CTGTCAGGCT 
    GAGCGTGTGA TCGATTTCAT CAGGGCCAGG GCATCTCAAG GAGCTTGATG 
    AGTTCAGGCT GGTGAAACCG ATGATTGGGC GATGGAAGAT GTTCTCTTCT 
    TGTTTCTTCT TTTTTTTTTT GTGGAGTATG CATGTATAAG GTGTTAATGA 
    ATTGGGGGGA GGAGAGAGAG AGAGATGGAT GTGATGAGAT TCAGACTTAC 
    TGTGTGTGTT GTGGTAATTG TTTCCTGCAT GCATGGATCT GGATGCATGG 
    GTGAGGGGGT GAGTTGAGTG GTGAATTTCT GATGTACAGT ACTACAGGGG 
    GATAAACTAT CTCATGGTAG CAGCAGTGTT CTAGCTATCT CATGGTCTCG 
    ATCTTAATTA TGGTGGATAA ACTACGCTTA ATTGCTTGCC

    Gene models with high sequence identity

    1. AT3G47470.1 [+] show detail - light-harvesting chlorophyll-protein complex I subunit A4
      E-value: 1e-102; Score: 370.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Chlorophyll a-b binding protein 4e-60
    HMMPfam Chloroa_b-bind 3.3e-44
    HMMPanther Chlorophyll A-B binding protein 9.1e-105

    See the detailed result >

    AT3G47470.1

    Model type
    Protein coding
    Short Description
    light-harvesting chlorophyll-protein complex I subunit A4
    Curator Summary
    Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most known Cab proteins.
    Computational Description
    light-harvesting chlorophyll-protein complex I subunit A4 (LHCA4); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to karrikin, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 2336 Blast hits to 2249 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1967; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR